| Basic Information ▶ | |
| VISDB ID | TVIS20068815 |
|---|---|
| Fusion Name | HPV-ENSG00000294849 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Nanopore Long-Read Sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | CaSki |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical Cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 38932482 |
| Journal | Journal of Medical Virology |
| Published Year | 2024 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr1 |
| Cytogenetic Band | q24.2,q24.3 |
| Human Strand | + |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 169096699 |
| Hg38 End | 171044108 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000294849, ENSG00000237707, ENSG00000289466, ENSG00000302084, ENSG00000234604, ENSG00000230704, METTL18, RN7SL333P, ENSG00000288139, RN7SL269P, MRPS10P1, KIFAP3-AS1, ENSG00000306896, SIGLEC30P, MIR3119-1, MIR3119-2, ISCUP1, HAUS4P1, ENSG00000225545, ENSG00000308640, ENSG00000308627, ENSG00000271811, ENSG00000235575, BLZF1, CCDC181, ENSG00000213062, F5, SELL, ENSG00000303002, NTMT2, LINC01142, GORAB, PRRX1, ENSG00000295370, ATP1B1, NME7, SLC19A2, SELP, FIRRM, SELE, KIFAP3, LINC01681, GORAB-AS1, ENSG00000235303, MROH9, LINC00970, LINC00970, SCYL3, ENSG00000231424 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | gi|333031|lcl|HPV16REF.1| |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human Papillomavirus 16 (HPV16), complete genome |
| Virus Genome Length | 7904 bp |
| Virus Breakpoint1 | 668 |
| Virus Breakpoint2 | 668 |
| Virus Gene Name | L2 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D