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Phenotypic Information (metabolism pathway, cancer, disease, phenome) | |
Gene-Gene Network Information: Co-Expression Network, Interacting Genes & KEGG | |
Gene Summary for TIMM17B |
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Phenotypic Information for TIMM17B(metabolism pathway, cancer, disease, phenome) |
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Cancer | CGAP: TIMM17B |
Familial Cancer Database: TIMM17B |
* This gene is included in those cancer gene databases. |
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Oncogene 1 | Significant driver gene in |
cf) number; DB name 1 Oncogene; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 2 Tumor Suppressor gene; https://bioinfo.uth.edu/TSGene/, 3 Cancer Gene Census; http://www.nature.com/nrc/journal/v4/n3/abs/nrc1299.html, 4 CancerGenes; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 5 Network of Cancer Gene; http://ncg.kcl.ac.uk/index.php, 1Therapeutic Vulnerabilities in Cancer; http://cbio.mskcc.org/cancergenomics/statius/ |
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REACTOME_METABOLISM_OF_PROTEINS |
Mutations for TIMM17B |
* Under tables are showing count per each tissue to give us broad intuition about tissue specific mutation patterns.You can go to the detailed page for each mutation database's web site. |
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There's no structural variation information in COSMIC data for this gene. |
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* From mRNA Sanger sequences, Chitars2.0 arranged chimeric transcripts. This table shows TIMM17B related fusion information. |
ID | Head Gene | Tail Gene | Accession | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a |
BU676136 | TIMM17B | 19 | 332 | X | 48750732 | 48751045 | SPINT1 | 327 | 468 | 15 | 41149426 | 41149567 | |
CB250487 | TIMM17B | 19 | 332 | X | 48750732 | 48751045 | SPINT1 | 327 | 468 | 15 | 41149426 | 41149567 | |
BM968551 | TIMM17B | 19 | 332 | X | 48750732 | 48751045 | SPINT1 | 327 | 467 | 15 | 41149426 | 41149567 | |
BE716540 | PLP2 | 10 | 242 | X | 49031119 | 49031351 | TIMM17B | 239 | 325 | X | 48750756 | 48750842 |
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There's no copy number variation information in COSMIC data for this gene. |
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Stat. for Non-Synonymous SNVs (# total SNVs=16) | (# total SNVs=5) |
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(# total SNVs=0) | (# total SNVs=0) |
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* When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site,primary_histology,mutation(aa),pubmedID. |
GRCh37 position | Mutation(aa) | Unique sampleID count |
chr23:48752352-48752352 | p.N53N | 2 |
chr23:48754135-48754135 | p.W11* | 2 |
chr23:48751031-48751031 | p.S167N | 1 |
chr23:48751096-48751096 | p.P145P | 1 |
chr23:48752377-48752377 | p.R45Q | 1 |
chr23:48751229-48751229 | p.G128G | 1 |
chr23:48752378-48752378 | p.R45W | 1 |
chr23:48751255-48751255 | p.G120R | 1 |
chr23:48752384-48752384 | p.G43R | 1 |
chr23:48751296-48751296 | p.? | 1 |
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Point Mutation/ Tissue ID | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 |
# sample | 1 |   |   | 1 | 1 |   |   |   | 1 |   |   | 1 | 1 | 1 |   |   |   |   |   | 3 |
# mutation | 1 |   |   | 1 | 1 |   |   |   | 1 |   |   | 1 | 1 | 1 |   |   |   |   |   | 3 |
nonsynonymous SNV | 1 |   |   | 1 |   |   |   |   | 1 |   |   | 1 | 1 | 1 |   |   |   |   |   | 2 |
synonymous SNV |   |   |   |   | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   | 1 |
cf) Tissue ID; Tissue type (1; BLCA[Bladder Urothelial Carcinoma], 2; BRCA[Breast invasive carcinoma], 3; CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], 4; COAD[Colon adenocarcinoma], 5; GBM[Glioblastoma multiforme], 6; Glioma Low Grade, 7; HNSC[Head and Neck squamous cell carcinoma], 8; KICH[Kidney Chromophobe], 9; KIRC[Kidney renal clear cell carcinoma], 10; KIRP[Kidney renal papillary cell carcinoma], 11; LAML[Acute Myeloid Leukemia], 12; LUAD[Lung adenocarcinoma], 13; LUSC[Lung squamous cell carcinoma], 14; OV[Ovarian serous cystadenocarcinoma ], 15; PAAD[Pancreatic adenocarcinoma], 16; PRAD[Prostate adenocarcinoma], 17; SKCM[Skin Cutaneous Melanoma], 18:STAD[Stomach adenocarcinoma], 19:THCA[Thyroid carcinoma], 20:UCEC[Uterine Corpus Endometrial Carcinoma]) |
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* We represented just top 10 SNVs. When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site, primary_histology, mutation(aa), pubmedID. |
Genomic Position | Mutation(aa) | Unique sampleID count |
chrX:48751383 | p.F66F,TIMM17B | 1 |
chrX:48751400 | p.S65G,TIMM17B | 1 |
chrX:48751501 | p.R45Q,TIMM17B | 1 |
chrX:48751506 | p.R45W,TIMM17B | 1 |
chrX:48752377 | p.G43R,TIMM17B | 1 |
chrX:48752378 | p.R12Q,TIMM17B | 1 |
chrX:48752384 | p.P145P,TIMM17B | 1 |
chrX:48754133 | p.G120R,TIMM17B | 1 |
chrX:48751096 | p.R106C,TIMM17B | 1 |
chrX:48751255 | p.G100V,TIMM17B | 1 |
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* Copy number data were extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered on Jan-05-2015. Function ProcessCNAData in TCGA-Assembler package was used to obtain gene-level copy number value which is calculated as the average copy number of the genomic region of a gene. |
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cf) Tissue ID[Tissue type]: BLCA[Bladder Urothelial Carcinoma], BRCA[Breast invasive carcinoma], CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], COAD[Colon adenocarcinoma], GBM[Glioblastoma multiforme], Glioma Low Grade, HNSC[Head and Neck squamous cell carcinoma], KICH[Kidney Chromophobe], KIRC[Kidney renal clear cell carcinoma], KIRP[Kidney renal papillary cell carcinoma], LAML[Acute Myeloid Leukemia], LUAD[Lung adenocarcinoma], LUSC[Lung squamous cell carcinoma], OV[Ovarian serous cystadenocarcinoma ], PAAD[Pancreatic adenocarcinoma], PRAD[Prostate adenocarcinoma], SKCM[Skin Cutaneous Melanoma], STAD[Stomach adenocarcinoma], THCA[Thyroid carcinoma], UCEC[Uterine Corpus Endometrial Carcinoma] |
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Gene Expression for TIMM17B |
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* CCLE gene expression data were extracted from CCLE_Expression_Entrez_2012-10-18.res: Gene-centric RMA-normalized mRNA expression data. |
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* Normalized gene expression data of RNASeqV2 was extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered at Jan-05-2015. Only eight cancer types have enough normal control samples for differential expression analysis. (t test, adjusted p<0.05 (using Benjamini-Hochberg FDR)) |
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* This plots show the correlation between CNV and gene expression. |
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Gene-Gene Network Information |
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* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
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ALKBH6,C1orf35,CCDC12,CCDC22,COMMD4,EBP,FAM50A, GPKOW,HSD17B10,MAGIX,MRPL55,NDUFB11,POLR2I,PQBP1, RBM10,RBM42,SDHAF1,TIMM17B,UXT,WDR13,WDR45 | ACOT8,FAM195A,FASTK,CPTP,HSF1,MAP2K2,MRPL14, MRPL38,NOSIP,NSUN5,PHPT1,PMF1,PMPCA,POP7, PPP2R1A,PRMT1,PTGES2,SGTA,SIVA1,TIMM17B,TMEM134 |
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APOO,CCDC22,EBP,EMD,FAM104B,FAM58A,FTSJ1, FUNDC2,HSD17B10,LAGE3,MCTS1,NAA10,NDUFB11,PDZD11, PQBP1,PRDX4,RNF113A,SSR4,SUV39H1,TIMM17B,UXT | ANAPC11,ARL6IP4,ASNA1,CHCHD2,CHCHD5,DPM3,FAM96B, MRPL57,MRPL43,MRPS24,NDUFA7,NDUFB4,NUBP2,POP7, PRDX2,PSMD8,PSMD9,RPS19BP1,SCNM1,SNX17,TIMM17B |
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* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
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Pharmacological Information for TIMM17B |
There's no related Drug. |
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Cross referenced IDs for TIMM17B |
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section |
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