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Phenotypic Information (metabolism pathway, cancer, disease, phenome) | |
Gene-Gene Network Information: Co-Expression Network, Interacting Genes & KEGG | |
Gene Summary for SLC37A4 |
Basic gene info. | Gene symbol | SLC37A4 |
Gene name | solute carrier family 37 (glucose-6-phosphate transporter), member 4 | |
Synonyms | G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|TRG-19|TRG19 | |
Cytomap | UCSC genome browser: 11q23.3 | |
Genomic location | chr11 :118895060-118900278 | |
Type of gene | protein-coding | |
RefGenes | NM_001164277.1, NM_001164278.1,NM_001164279.1,NM_001164280.1,NM_001467.5, | |
Ensembl id | ENSG00000262676 | |
Description | glucose-5-phosphate transporterglucose-6-phosphatase, transport (glucose) protein 3glucose-6-phosphatase, transport (glucose-6-phosphate) protein 1glucose-6-phosphatase, transport (phosphate/pyrophosphate) protein 2glucose-6-phosphate translocasemicr | |
Modification date | 20141219 | |
dbXrefs | MIM : 602671 | |
HGNC : HGNC | ||
Ensembl : ENSG00000137700 | ||
HPRD : 04052 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_SLC37A4 | |
BioGPS: 2542 | ||
Gene Expression Atlas: ENSG00000262676 | ||
The Human Protein Atlas: ENSG00000262676 | ||
Pathway | NCI Pathway Interaction Database: SLC37A4 | |
KEGG: SLC37A4 | ||
REACTOME: SLC37A4 | ||
ConsensusPathDB | ||
Pathway Commons: SLC37A4 | ||
Metabolism | MetaCyc: SLC37A4 | |
HUMANCyc: SLC37A4 | ||
Regulation | Ensembl's Regulation: ENSG00000262676 | |
miRBase: chr11 :118,895,060-118,900,278 | ||
TargetScan: NM_001164277 | ||
cisRED: ENSG00000262676 | ||
Context | iHOP: SLC37A4 | |
cancer metabolism search in PubMed: SLC37A4 | ||
UCL Cancer Institute: SLC37A4 | ||
Assigned class in ccmGDB | C |
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Phenotypic Information for SLC37A4(metabolism pathway, cancer, disease, phenome) |
Cancer Description | |
Cancer | CGAP: SLC37A4 |
Familial Cancer Database: SLC37A4 |
* This gene is included in those cancer gene databases. |
. | ||||||||||||||||||||
Oncogene 1 | Significant driver gene in |
cf) number; DB name 1 Oncogene; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 2 Tumor Suppressor gene; https://bioinfo.uth.edu/TSGene/, 3 Cancer Gene Census; http://www.nature.com/nrc/journal/v4/n3/abs/nrc1299.html, 4 CancerGenes; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 5 Network of Cancer Gene; http://ncg.kcl.ac.uk/index.php, 1Therapeutic Vulnerabilities in Cancer; http://cbio.mskcc.org/cancergenomics/statius/ |
Metabolic Pathway Description | |
REACTOME_METABOLISM_OF_CARBOHYDRATES |
Mutations for SLC37A4 |
* Under tables are showing count per each tissue to give us broad intuition about tissue specific mutation patterns.You can go to the detailed page for each mutation database's web site. |
Structural Variants in COSMIC: go to COSMIC mutation histogram |
- Statistics for Tissue and Mutation type | Top |
- For Inter-chromosomal Variations |
There's no inter-chromosomal structural variation. |
- For Intra-chromosomal Variations |
* Intra-chromosomal variantions includes 'intrachromosomal amplicon to amplicon', 'intrachromosomal amplicon to non-amplified dna', 'intrachromosomal deletion', 'intrachromosomal fold-back inversion', 'intrachromosomal inversion', 'intrachromosomal tandem duplication', 'Intrachromosomal unknown type', 'intrachromosomal with inverted orientation', 'intrachromosomal with non-inverted orientation'. |
Sample | Symbol_a | Chr_a | Start_a | End_a | Symbol_b | Chr_b | Start_b | End_b |
ovary | SLC37A4 | chr11 | 118896080 | 118896100 | chr11 | 117884655 | 117884675 |
cf) Tissue number; Tissue name (1;Breast, 2;Central_nervous_system, 3;Haematopoietic_and_lymphoid_tissue, 4;Large_intestine, 5;Liver, 6;Lung, 7;Ovary, 8;Pancreas, 9;Prostate, 10;Skin, 11;Soft_tissue, 12;Upper_aerodigestive_tract) |
Related fusion transcripts : go to Chitars2.0 |
* From mRNA Sanger sequences, Chitars2.0 arranged chimeric transcripts. This table shows SLC37A4 related fusion information. |
ID | Head Gene | Tail Gene | Accession | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a |
Other DBs for Structural Variants |
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Copy Number Variations in COSMIC: go to COSMIC mutation CNV/Expr |
There's no copy number variation information in COSMIC data for this gene. |
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SNV Counts per Each Loci in COSMIC data: go to COSMIC point mutation |
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Somatic Mutation Counts per Tissue in COSMIC data |
Stat. for Non-Synonymous SNVs (# total SNVs=20) | (# total SNVs=10) |
(# total SNVs=0) | (# total SNVs=0) |
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Top 10 SNVs Having the Most Samples in COSMIC data |
* When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site,primary_histology,mutation(aa),pubmedID. |
GRCh37 position | Mutation(aa) | Unique sampleID count |
chr11:118899942-118899942 | p.K46K | 2 |
chr11:118895781-118895781 | p.G398S | 2 |
chr11:118895962-118895962 | p.N375N | 2 |
chr11:118895714-118895714 | p.V420G | 1 |
chr11:118898449-118898449 | p.S172C | 1 |
chr11:118899945-118899945 | p.D45E | 1 |
chr11:118895724-118895724 | p.A417S | 1 |
chr11:118898460-118898460 | p.T168T | 1 |
chr11:118899952-118899952 | p.P43H | 1 |
chr11:118898948-118898948 | p.A113T | 1 |
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SNV Counts per Each Loci in TCGA data |
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Point Mutation/ Tissue ID | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 |
# sample |   | 1 |   | 3 |   |   | 1 |   | 2 |   |   | 2 |   | 1 |   | 1 |   | 2 |   | 6 |
# mutation |   | 1 |   | 3 |   |   | 1 |   | 2 |   |   | 2 |   | 1 |   | 1 |   | 2 |   | 8 |
nonsynonymous SNV |   | 1 |   | 3 |   |   | 1 |   | 2 |   |   | 1 |   |   |   | 1 |   | 2 |   | 5 |
synonymous SNV |   |   |   |   |   |   |   |   |   |   |   | 1 |   | 1 |   |   |   |   |   | 3 |
cf) Tissue ID; Tissue type (1; BLCA[Bladder Urothelial Carcinoma], 2; BRCA[Breast invasive carcinoma], 3; CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], 4; COAD[Colon adenocarcinoma], 5; GBM[Glioblastoma multiforme], 6; Glioma Low Grade, 7; HNSC[Head and Neck squamous cell carcinoma], 8; KICH[Kidney Chromophobe], 9; KIRC[Kidney renal clear cell carcinoma], 10; KIRP[Kidney renal papillary cell carcinoma], 11; LAML[Acute Myeloid Leukemia], 12; LUAD[Lung adenocarcinoma], 13; LUSC[Lung squamous cell carcinoma], 14; OV[Ovarian serous cystadenocarcinoma ], 15; PAAD[Pancreatic adenocarcinoma], 16; PRAD[Prostate adenocarcinoma], 17; SKCM[Skin Cutaneous Melanoma], 18:STAD[Stomach adenocarcinoma], 19:THCA[Thyroid carcinoma], 20:UCEC[Uterine Corpus Endometrial Carcinoma]) |
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Top 10 SNVs Having the Most Samples in TCGA data |
* We represented just top 10 SNVs. When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site, primary_histology, mutation(aa), pubmedID. |
Genomic Position | Mutation(aa) | Unique sampleID count |
chr11:118900037 | p.K208N,SLC37A4 | 1 |
chr11:118897701 | p.S172C,SLC37A4 | 1 |
chr11:118900041 | p.T168T,SLC37A4 | 1 |
chr11:118895642 | p.A113T,SLC37A4 | 1 |
chr11:118898339 | p.W78C,SLC37A4 | 1 |
chr11:118895724 | p.R423Q,SLC37A4 | 1 |
chr11:118898449 | p.R77C,SLC37A4 | 1 |
chr11:118895727 | p.A396S,SLC37A4 | 1 |
chr11:118898460 | p.D48G,SLC37A4 | 1 |
chr11:118895769 | p.T395S,SLC37A4 | 1 |
Other DBs for Point Mutations |
Copy Number for SLC37A4 in TCGA |
* Copy number data were extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered on Jan-05-2015. Function ProcessCNAData in TCGA-Assembler package was used to obtain gene-level copy number value which is calculated as the average copy number of the genomic region of a gene. |
cf) Tissue ID[Tissue type]: BLCA[Bladder Urothelial Carcinoma], BRCA[Breast invasive carcinoma], CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], COAD[Colon adenocarcinoma], GBM[Glioblastoma multiforme], Glioma Low Grade, HNSC[Head and Neck squamous cell carcinoma], KICH[Kidney Chromophobe], KIRC[Kidney renal clear cell carcinoma], KIRP[Kidney renal papillary cell carcinoma], LAML[Acute Myeloid Leukemia], LUAD[Lung adenocarcinoma], LUSC[Lung squamous cell carcinoma], OV[Ovarian serous cystadenocarcinoma ], PAAD[Pancreatic adenocarcinoma], PRAD[Prostate adenocarcinoma], SKCM[Skin Cutaneous Melanoma], STAD[Stomach adenocarcinoma], THCA[Thyroid carcinoma], UCEC[Uterine Corpus Endometrial Carcinoma] |
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Gene Expression for SLC37A4 |
Gene Expression in Cancer Cell-lines (CCLE) |
* CCLE gene expression data were extracted from CCLE_Expression_Entrez_2012-10-18.res: Gene-centric RMA-normalized mRNA expression data. |
Differential Gene Expression in Primary Tumors (TCGA) |
* Normalized gene expression data of RNASeqV2 was extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered at Jan-05-2015. Only eight cancer types have enough normal control samples for differential expression analysis. (t test, adjusted p<0.05 (using Benjamini-Hochberg FDR)) |
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CNV vs Gene Expression Plot |
* This plots show the correlation between CNV and gene expression. |
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Gene-Gene Network Information |
Co-Expressed gene's network Plot |
* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
ATP5L,BUD13,LBHD1___C11orf98,C11orf71,C7orf55,HGH1,DCPS, DPAGT1,EI24,FBXL6,H2AFX,HINFP,HMBS,HYLS1, PTS,RNF26,RPS25,SLC37A4,TIMM8B,TRAPPC4,ZPR1 | ADSL,ATP5G1,BZW2,C19orf47,CAMK2B,FLJ37453,GAPDH, GOT2,IDH2,MACROD1,MAPKAPK3,PACSIN3,PKM,PPP2R3B, RTN2,SBK1,SLC29A2,SLC37A4,TMEM201,TUBA4A,ZNRF1 | ||||
ABT1,ARL2,ATP5L,BANF1,LAMTOR1,UQCC3,COA4, DNAJA3,LIPT2,LOC152217,MRPL48,NTHL1,OVOL1,PAAF1, PPP1CA,PRDX5,RPUSD4,SLC29A2,SLC37A4,TMEM223,WDR74 | ACY3,TMEM253,CCDC108,CHN2,CLDN15,CYP2J2,DAK, DGAT1,DNASE1,F11,FBP1,KCNH6,MMEL1,NAT8B, PFKFB4,PNLIPRP2,PRODH,SI,SLC37A4,TM4SF5,TMEM92 |
Co-Expressed gene's Protein-protein interaction Network Plot |
* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
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Interacting Genes (from Pathway Commons) |
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Pharmacological Information for SLC37A4 |
Cross-referenced pharmacological DB IDs from Uniprot |
DB Category | DB Name | DB's ID and Url link |
Drug-Gene Interaction Network |
* Gene Centered Interaction Network. |
* Drug Centered Interaction Network. |
DrugBank ID | Target Name | Drug Groups | Generic Name | Drug Centered Network | Drug Structure |
DB00121 | solute carrier family 37 (glucose-6-phosphate transporter), member 4 | approved; nutraceutical | Biotin |
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Cross referenced IDs for SLC37A4 |
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section |
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