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Phenotypic Information (metabolism pathway, cancer, disease, phenome) | |
Gene-Gene Network Information: Co-Expression Network, Interacting Genes & KEGG | |
Gene Summary for ENPP7 |
Basic gene info. | Gene symbol | ENPP7 |
Gene name | ectonucleotide pyrophosphatase/phosphodiesterase 7 | |
Synonyms | ALK-SMase|E-NPP 7|NPP-7|NPP7 | |
Cytomap | UCSC genome browser: 17q25.3 | |
Genomic location | chr17 :77704881-77716021 | |
Type of gene | protein-coding | |
RefGenes | NM_178543.4, | |
Ensembl id | ENSG00000261981 | |
Description | alkaline sphingomyelin phosphodiesterasealkaline sphingomyelinaseectonucleotide pyrophosphatase/phosphodiesterase family member 7intestinal alkaline sphingomyelinase | |
Modification date | 20141207 | |
dbXrefs | HGNC : HGNC | |
Ensembl : ENSG00000182156 | ||
Vega : OTTHUMG00000177462 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_ENPP7 | |
BioGPS: 339221 | ||
Gene Expression Atlas: ENSG00000261981 | ||
The Human Protein Atlas: ENSG00000261981 | ||
Pathway | NCI Pathway Interaction Database: ENPP7 | |
KEGG: ENPP7 | ||
REACTOME: ENPP7 | ||
ConsensusPathDB | ||
Pathway Commons: ENPP7 | ||
Metabolism | MetaCyc: ENPP7 | |
HUMANCyc: ENPP7 | ||
Regulation | Ensembl's Regulation: ENSG00000261981 | |
miRBase: chr17 :77,704,881-77,716,021 | ||
TargetScan: NM_178543 | ||
cisRED: ENSG00000261981 | ||
Context | iHOP: ENPP7 | |
cancer metabolism search in PubMed: ENPP7 | ||
UCL Cancer Institute: ENPP7 | ||
Assigned class in ccmGDB | C |
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Phenotypic Information for ENPP7(metabolism pathway, cancer, disease, phenome) |
Cancer Description | |
Cancer | CGAP: ENPP7 |
Familial Cancer Database: ENPP7 |
* This gene is included in those cancer gene databases. |
Oncogene 1 | Significant driver gene in |
cf) number; DB name 1 Oncogene; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 2 Tumor Suppressor gene; https://bioinfo.uth.edu/TSGene/, 3 Cancer Gene Census; http://www.nature.com/nrc/journal/v4/n3/abs/nrc1299.html, 4 CancerGenes; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 5 Network of Cancer Gene; http://ncg.kcl.ac.uk/index.php, 1Therapeutic Vulnerabilities in Cancer; http://cbio.mskcc.org/cancergenomics/statius/ |
Metabolic Pathway Description | |
KEGG_SPHINGOLIPID_METABOLISM REACTOME_GLYCOSPHINGOLIPID_METABOLISM REACTOME_PHOSPHOLIPID_METABOLISM REACTOME_SPHINGOLIPID_METABOLISM REACTOME_METABOLISM_OF_LIPIDS_AND_LIPOPROTEINS |
Others | |
OMIM | |
Orphanet | |
Disease | KEGG Disease: ENPP7 |
MedGen: ENPP7 (Human Medical Genetics with Condition) | |
ClinVar: ENPP7 | |
Phenotype | MGI: ENPP7 (International Mouse Phenotyping Consortium) |
PhenomicDB: ENPP7 |
Mutations for ENPP7 |
* Under tables are showing count per each tissue to give us broad intuition about tissue specific mutation patterns.You can go to the detailed page for each mutation database's web site. |
Structural Variants in COSMIC: go to COSMIC mutation histogram |
- Statistics for Tissue and Mutation type | Top |
- For Inter-chromosomal Variations |
There's no inter-chromosomal structural variation. |
- For Intra-chromosomal Variations |
* Intra-chromosomal variantions includes 'intrachromosomal amplicon to amplicon', 'intrachromosomal amplicon to non-amplified dna', 'intrachromosomal deletion', 'intrachromosomal fold-back inversion', 'intrachromosomal inversion', 'intrachromosomal tandem duplication', 'Intrachromosomal unknown type', 'intrachromosomal with inverted orientation', 'intrachromosomal with non-inverted orientation'. |
Sample | Symbol_a | Chr_a | Start_a | End_a | Symbol_b | Chr_b | Start_b | End_b |
ovary | ENPP7 | chr17 | 77711047 | 77711067 | chr17 | 77741241 | 77741261 |
cf) Tissue number; Tissue name (1;Breast, 2;Central_nervous_system, 3;Haematopoietic_and_lymphoid_tissue, 4;Large_intestine, 5;Liver, 6;Lung, 7;Ovary, 8;Pancreas, 9;Prostate, 10;Skin, 11;Soft_tissue, 12;Upper_aerodigestive_tract) |
Related fusion transcripts : go to Chitars2.0 |
* From mRNA Sanger sequences, Chitars2.0 arranged chimeric transcripts. This table shows ENPP7 related fusion information. |
ID | Head Gene | Tail Gene | Accession | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a |
Other DBs for Structural Variants |
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Copy Number Variations in COSMIC: go to COSMIC mutation CNV/Expr |
Mutation type/ Tissue ID | brca | cns | cerv | endome | haematopo | kidn | Lintest | liver | lung | ns | ovary | pancre | prost | skin | stoma | thyro | urina | |||
Total # sample | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | |||
GAIN (# sample) | 1 |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | |||
LOSS (# sample) |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
cf) Tissue ID; Tissue type (1; Breast, 2; Central_nervous_system, 3; Cervix, 4; Endometrium, 5; Haematopoietic_and_lymphoid_tissue, 6; Kidney, 7; Large_intestine, 8; Liver, 9; Lung, 10; NS, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary_tract) |
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SNV Counts per Each Loci in COSMIC data: go to COSMIC point mutation |
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Somatic Mutation Counts per Tissue in COSMIC data |
Stat. for Non-Synonymous SNVs (# total SNVs=43) | (# total SNVs=14) |
(# total SNVs=0) | (# total SNVs=0) |
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Top 10 SNVs Having the Most Samples in COSMIC data |
* When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site,primary_histology,mutation(aa),pubmedID. |
GRCh37 position | Mutation(aa) | Unique sampleID count |
chr17:77710932-77710932 | p.F373L | 5 |
chr17:77705076-77705076 | p.R59* | 2 |
chr17:77709262-77709262 | p.E274K | 2 |
chr17:77705082-77705082 | p.G61R | 2 |
chr17:77709122-77709122 | p.R227Q | 2 |
chr17:77709291-77709291 | p.N283N | 2 |
chr17:77704912-77704912 | p.L4P | 2 |
chr17:77711814-77711814 | p.G449E | 2 |
chr17:77704968-77704968 | p.P23S | 2 |
chr17:77709154-77709154 | p.R238C | 2 |
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SNV Counts per Each Loci in TCGA data |
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Point Mutation/ Tissue ID | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 |
# sample | 1 | 5 |   | 3 | 4 |   | 4 |   | 1 | 1 |   | 10 | 3 | 2 |   | 1 | 11 | 9 |   | 5 |
# mutation | 2 | 5 |   | 3 | 4 |   | 4 |   | 1 | 1 |   | 10 | 4 | 2 |   | 1 | 11 | 10 |   | 5 |
nonsynonymous SNV | 1 | 3 |   | 2 | 4 |   | 4 |   | 1 |   |   | 7 | 3 | 1 |   | 1 | 4 | 6 |   | 3 |
synonymous SNV | 1 | 2 |   | 1 |   |   |   |   |   | 1 |   | 3 | 1 | 1 |   |   | 7 | 4 |   | 2 |
cf) Tissue ID; Tissue type (1; BLCA[Bladder Urothelial Carcinoma], 2; BRCA[Breast invasive carcinoma], 3; CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], 4; COAD[Colon adenocarcinoma], 5; GBM[Glioblastoma multiforme], 6; Glioma Low Grade, 7; HNSC[Head and Neck squamous cell carcinoma], 8; KICH[Kidney Chromophobe], 9; KIRC[Kidney renal clear cell carcinoma], 10; KIRP[Kidney renal papillary cell carcinoma], 11; LAML[Acute Myeloid Leukemia], 12; LUAD[Lung adenocarcinoma], 13; LUSC[Lung squamous cell carcinoma], 14; OV[Ovarian serous cystadenocarcinoma ], 15; PAAD[Pancreatic adenocarcinoma], 16; PRAD[Prostate adenocarcinoma], 17; SKCM[Skin Cutaneous Melanoma], 18:STAD[Stomach adenocarcinoma], 19:THCA[Thyroid carcinoma], 20:UCEC[Uterine Corpus Endometrial Carcinoma]) |
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Top 10 SNVs Having the Most Samples in TCGA data |
* We represented just top 10 SNVs. When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site, primary_histology, mutation(aa), pubmedID. |
Genomic Position | Mutation(aa) | Unique sampleID count |
chr17:77709262 | p.A458T | 2 |
chr17:77708929 | p.A163P | 2 |
chr17:77711814 | p.E274K | 2 |
chr17:77711840 | p.G449E | 2 |
chr17:77708904 | p.G114G | 1 |
chr17:77710968 | p.T201T | 1 |
chr17:77709073 | p.G284V | 1 |
chr17:77705138 | p.V124M | 1 |
chr17:77709217 | p.G206D | 1 |
chr17:77708908 | p.A314V | 1 |
Other DBs for Point Mutations |
Copy Number for ENPP7 in TCGA |
* Copy number data were extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered on Jan-05-2015. Function ProcessCNAData in TCGA-Assembler package was used to obtain gene-level copy number value which is calculated as the average copy number of the genomic region of a gene. |
cf) Tissue ID[Tissue type]: BLCA[Bladder Urothelial Carcinoma], BRCA[Breast invasive carcinoma], CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], COAD[Colon adenocarcinoma], GBM[Glioblastoma multiforme], Glioma Low Grade, HNSC[Head and Neck squamous cell carcinoma], KICH[Kidney Chromophobe], KIRC[Kidney renal clear cell carcinoma], KIRP[Kidney renal papillary cell carcinoma], LAML[Acute Myeloid Leukemia], LUAD[Lung adenocarcinoma], LUSC[Lung squamous cell carcinoma], OV[Ovarian serous cystadenocarcinoma ], PAAD[Pancreatic adenocarcinoma], PRAD[Prostate adenocarcinoma], SKCM[Skin Cutaneous Melanoma], STAD[Stomach adenocarcinoma], THCA[Thyroid carcinoma], UCEC[Uterine Corpus Endometrial Carcinoma] |
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Gene Expression for ENPP7 |
Gene Expression in Cancer Cell-lines (CCLE) |
* CCLE gene expression data were extracted from CCLE_Expression_Entrez_2012-10-18.res: Gene-centric RMA-normalized mRNA expression data. |
Differential Gene Expression in Primary Tumors (TCGA) |
* Normalized gene expression data of RNASeqV2 was extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered at Jan-05-2015. Only eight cancer types have enough normal control samples for differential expression analysis. (t test, adjusted p<0.05 (using Benjamini-Hochberg FDR)) |
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CNV vs Gene Expression Plot |
* This plots show the correlation between CNV and gene expression. |
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Gene-Gene Network Information |
Co-Expressed gene's network Plot |
* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
ACPP,BAGE,NBEAP1,CCER1,C12orf40,CCDC177,NCOR1P1, TSPEAR-AS2,CAMK1G,CLU,ENPP7,FAM3B,FER1L6,INHBB, STK26,OR1E1,SAGE1,SNAR-A13,SPATA22,TCL1B,TRIM24 | C1orf159,C8G,C9orf89,CHI3L1,CPA5,ENPP7,FAM27B, FGF3,HILS1,KRT81,KRT86,LGALS7,LOC644936,MED18, PCDHA1,QPCTL,RBP1,RGS14,TMEM191A,TRABD,UTF1 |
APC2,TEX40,CCDC42,CDH15,CEACAM20,CNTD1,CNTD2, ELOVL3,ENPP7,GPR128,SLC52A1,MAP3K15,NEUROG3,OR1L4, RARRES1,REEP6,SOX30,SYCE2,TNP2,VNN1,VNN2 | APOA1,APOA4,APOC3,C17orf78,CCL25,CRISP1,ENPP7, FABP6,FAM99A,FAM99B,GSTA5,LCE3E,LOC388428,MOS, ONECUT3,OR10H1,OR10H5,OR4N5,PWAR4___F2RL3___PAWR,SLC7A9,SPANXN3 |
Co-Expressed gene's Protein-protein interaction Network Plot |
* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
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Interacting Genes (from Pathway Commons) |
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Pharmacological Information for ENPP7 |
There's no related Drug. |
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Cross referenced IDs for ENPP7 |
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section |
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