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Phenotypic Information (metabolism pathway, cancer, disease, phenome) | |
Gene-Gene Network Information: Co-Expression Network, Interacting Genes & KEGG | |
Gene Summary for KIFC3 |
Basic gene info. | Gene symbol | KIFC3 |
Gene name | kinesin family member C3 | |
Synonyms | - | |
Cytomap | UCSC genome browser: 16q13-q21 | |
Genomic location | chr16 :57792128-57831929 | |
Type of gene | protein-coding | |
RefGenes | NM_001130099.1, NM_001130100.1,NM_005550.3, | |
Ensembl id | ENSG00000269180 | |
Description | kinesin-like protein KIFC3 | |
Modification date | 20141207 | |
dbXrefs | MIM : 604535 | |
HGNC : HGNC | ||
Ensembl : ENSG00000140859 | ||
HPRD : 05171 | ||
Vega : OTTHUMG00000133455 | ||
Protein | UniProt: go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_KIFC3 | |
BioGPS: 3801 | ||
Gene Expression Atlas: ENSG00000269180 | ||
The Human Protein Atlas: ENSG00000269180 | ||
Pathway | NCI Pathway Interaction Database: KIFC3 | |
KEGG: KIFC3 | ||
REACTOME: KIFC3 | ||
ConsensusPathDB | ||
Pathway Commons: KIFC3 | ||
Metabolism | MetaCyc: KIFC3 | |
HUMANCyc: KIFC3 | ||
Regulation | Ensembl's Regulation: ENSG00000269180 | |
miRBase: chr16 :57,792,128-57,831,929 | ||
TargetScan: NM_001130099 | ||
cisRED: ENSG00000269180 | ||
Context | iHOP: KIFC3 | |
cancer metabolism search in PubMed: KIFC3 | ||
UCL Cancer Institute: KIFC3 | ||
Assigned class in ccmGDB | C |
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Phenotypic Information for KIFC3(metabolism pathway, cancer, disease, phenome) |
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Cancer | CGAP: KIFC3 |
Familial Cancer Database: KIFC3 |
* This gene is included in those cancer gene databases. |
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Oncogene 1 | Significant driver gene in |
cf) number; DB name 1 Oncogene; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 2 Tumor Suppressor gene; https://bioinfo.uth.edu/TSGene/, 3 Cancer Gene Census; http://www.nature.com/nrc/journal/v4/n3/abs/nrc1299.html, 4 CancerGenes; http://nar.oxfordjournals.org/content/35/suppl_1/D721.long, 5 Network of Cancer Gene; http://ncg.kcl.ac.uk/index.php, 1Therapeutic Vulnerabilities in Cancer; http://cbio.mskcc.org/cancergenomics/statius/ |
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REACTOME_METABOLISM_OF_PROTEINS |
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OMIM | |
Orphanet | |
Disease | KEGG Disease: KIFC3 |
MedGen: KIFC3 (Human Medical Genetics with Condition) | |
ClinVar: KIFC3 | |
Phenotype | MGI: KIFC3 (International Mouse Phenotyping Consortium) |
PhenomicDB: KIFC3 |
Mutations for KIFC3 |
* Under tables are showing count per each tissue to give us broad intuition about tissue specific mutation patterns.You can go to the detailed page for each mutation database's web site. |
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- Statistics for Tissue and Mutation type | Top |
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- For Inter-chromosomal Variations |
* Inter-chromosomal variantions includes 'interchromosomal amplicon to amplicon', 'interchromosomal amplicon to non-amplified dna', 'interchromosomal insertion', 'Interchromosomal unknown type'. |
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- For Intra-chromosomal Variations |
There's no intra-chromosomal structural variation. |
Sample | Symbol_a | Chr_a | Start_a | End_a | Symbol_b | Chr_b | Start_b | End_b |
breast | KIFC3 | chr16 | 57810327 | 57810327 | KCNJ6 | chr21 | 39130447 | 39130447 |
cf) Tissue number; Tissue name (1;Breast, 2;Central_nervous_system, 3;Haematopoietic_and_lymphoid_tissue, 4;Large_intestine, 5;Liver, 6;Lung, 7;Ovary, 8;Pancreas, 9;Prostate, 10;Skin, 11;Soft_tissue, 12;Upper_aerodigestive_tract) |
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* From mRNA Sanger sequences, Chitars2.0 arranged chimeric transcripts. This table shows KIFC3 related fusion information. |
ID | Head Gene | Tail Gene | Accession | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a | Gene_a | qStart_a | qEnd_a | Chromosome_a | tStart_a | tEnd_a |
BM726297 | KIFC3 | 1 | 69 | 16 | 57792333 | 57792401 | CANX | 69 | 495 | 5 | 179157500 | 179157926 | |
BM680904 | CANX | 19 | 445 | 5 | 179157500 | 179157926 | KIFC3 | 445 | 498 | 16 | 57792333 | 57792386 | |
BE715187 | LAMB3 | 15 | 101 | 1 | 209791887 | 209791973 | KIFC3 | 95 | 265 | 16 | 57818591 | 57818761 | |
CV355096 | KIFC3 | 5 | 377 | 16 | 57806598 | 57806970 | INSR | 368 | 587 | 19 | 7227814 | 7228036 |
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Mutation type/ Tissue ID | brca | cns | cerv | endome | haematopo | kidn | Lintest | liver | lung | ns | ovary | pancre | prost | skin | stoma | thyro | urina | |||
Total # sample |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   | |||
GAIN (# sample) |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | |||
LOSS (# sample) |   |   |   |   |   |   |   |   |   |   | 1 |   |   |   |   |   |   |
cf) Tissue ID; Tissue type (1; Breast, 2; Central_nervous_system, 3; Cervix, 4; Endometrium, 5; Haematopoietic_and_lymphoid_tissue, 6; Kidney, 7; Large_intestine, 8; Liver, 9; Lung, 10; NS, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary_tract) |
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Stat. for Non-Synonymous SNVs (# total SNVs=47) | (# total SNVs=11) |
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(# total SNVs=2) | (# total SNVs=1) |
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* When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site,primary_histology,mutation(aa),pubmedID. |
GRCh37 position | Mutation(aa) | Unique sampleID count |
chr16:57794238-57794238 | p.R775C | 2 |
chr16:57804520-57804520 | p.V286V | 2 |
chr16:57804546-57804546 | p.R278W | 2 |
chr16:57799532-57799532 | p.R451C | 2 |
chr16:57794781-57794781 | p.I697V | 2 |
chr16:57793712-57793712 | p.R802W | 2 |
chr16:57798150-57798150 | p.E508K | 1 |
chr16:57805229-57805229 | p.E216Q | 1 |
chr16:57794233-57794233 | p.R776S | 1 |
chr16:57800863-57800863 | p.N418I | 1 |
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Point Mutation/ Tissue ID | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 |
# sample |   |   |   | 10 | 1 |   | 1 |   |   | 1 |   | 5 | 1 | 2 | 1 |   | 2 | 6 |   | 7 |
# mutation |   |   |   | 11 | 1 |   | 1 |   |   | 1 |   | 6 | 1 | 2 | 1 |   | 3 | 7 |   | 9 |
nonsynonymous SNV |   |   |   | 9 | 1 |   |   |   |   |   |   | 6 |   | 2 | 1 |   | 3 | 6 |   | 9 |
synonymous SNV |   |   |   | 2 |   |   | 1 |   |   | 1 |   |   | 1 |   |   |   |   | 1 |   |   |
cf) Tissue ID; Tissue type (1; BLCA[Bladder Urothelial Carcinoma], 2; BRCA[Breast invasive carcinoma], 3; CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], 4; COAD[Colon adenocarcinoma], 5; GBM[Glioblastoma multiforme], 6; Glioma Low Grade, 7; HNSC[Head and Neck squamous cell carcinoma], 8; KICH[Kidney Chromophobe], 9; KIRC[Kidney renal clear cell carcinoma], 10; KIRP[Kidney renal papillary cell carcinoma], 11; LAML[Acute Myeloid Leukemia], 12; LUAD[Lung adenocarcinoma], 13; LUSC[Lung squamous cell carcinoma], 14; OV[Ovarian serous cystadenocarcinoma ], 15; PAAD[Pancreatic adenocarcinoma], 16; PRAD[Prostate adenocarcinoma], 17; SKCM[Skin Cutaneous Melanoma], 18:STAD[Stomach adenocarcinoma], 19:THCA[Thyroid carcinoma], 20:UCEC[Uterine Corpus Endometrial Carcinoma]) |
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* We represented just top 10 SNVs. When you move the cursor on each content, you can see more deailed mutation information on the Tooltip. Those are primary_site, primary_histology, mutation(aa), pubmedID. |
Genomic Position | Mutation(aa) | Unique sampleID count |
chr16:57799532 | p.R312C,KIFC3 | 2 |
chr16:57805259 | p.Q605H,KIFC3 | 1 |
chr16:57794781 | p.R312R,KIFC3 | 1 |
chr16:57829017 | p.R12W,KIFC3 | 1 |
chr16:57799530 | p.S593L,KIFC3 | 1 |
chr16:57805300 | p.R312H,KIFC3 | 1 |
chr16:57794790 | p.R6Q,KIFC3 | 1 |
chr16:57829031 | p.R575H,KIFC3 | 1 |
chr16:57799531 | p.V106V,KIFC3 | 1 |
chr16:57793672 | p.A570V,KIFC3 | 1 |
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* Copy number data were extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered on Jan-05-2015. Function ProcessCNAData in TCGA-Assembler package was used to obtain gene-level copy number value which is calculated as the average copy number of the genomic region of a gene. |
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cf) Tissue ID[Tissue type]: BLCA[Bladder Urothelial Carcinoma], BRCA[Breast invasive carcinoma], CESC[Cervical squamous cell carcinoma and endocervical adenocarcinoma], COAD[Colon adenocarcinoma], GBM[Glioblastoma multiforme], Glioma Low Grade, HNSC[Head and Neck squamous cell carcinoma], KICH[Kidney Chromophobe], KIRC[Kidney renal clear cell carcinoma], KIRP[Kidney renal papillary cell carcinoma], LAML[Acute Myeloid Leukemia], LUAD[Lung adenocarcinoma], LUSC[Lung squamous cell carcinoma], OV[Ovarian serous cystadenocarcinoma ], PAAD[Pancreatic adenocarcinoma], PRAD[Prostate adenocarcinoma], SKCM[Skin Cutaneous Melanoma], STAD[Stomach adenocarcinoma], THCA[Thyroid carcinoma], UCEC[Uterine Corpus Endometrial Carcinoma] |
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Gene Expression for KIFC3 |
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* CCLE gene expression data were extracted from CCLE_Expression_Entrez_2012-10-18.res: Gene-centric RMA-normalized mRNA expression data. |
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* Normalized gene expression data of RNASeqV2 was extracted from TCGA using R package TCGA-Assembler. The URLs of all public data files on TCGA DCC data server were gathered at Jan-05-2015. Only eight cancer types have enough normal control samples for differential expression analysis. (t test, adjusted p<0.05 (using Benjamini-Hochberg FDR)) |
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* This plots show the correlation between CNV and gene expression. |
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Gene-Gene Network Information |
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* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
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PXDC1,CCDC102A,COL18A1,FAM20C,FHL3,KIFC3,LCAT, LMNA,MAP7D1,MGAT1,PDLIM2,PDLIM7,PLEKHM2,PPM1F, PRKCDBP,PTGIR,RAB3IL1,RIN3,SERPINH1,SPHK1,TUBB6 | ASCC2,DBNL,EGLN2,EML3,FES,FURIN,INF2, KANK3,KIFC3,LRFN4,LZTR1,LZTS2,NUCB1,PHLDA3, PKN1,PPP1R12C,RNH1,RNPEPL1,RPS6KA4,TAOK2,ZDHHC8 |
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BMP1,CERCAM,CFH,CHST15,COL18A1,COL6A2,GNAI2, KIFC3,LAMB2,LATS2,LEPRE1,LOXL1,MAP7D1,MAPK11, MMP14,MRC2,NXN,PRKCDBP,SLC12A4,TSPAN4,UBTD1 | ABCD1,ANGPTL4,CDR2L,CITED1,DFNA5,FTCD,HOXC11, KIFC3,MAOB,MGC45800,PHYHIPL,PMP22,RHOBTB2,SEC14L2, SFRP5,SFXN3,SH3GL1,SLC16A4,SUSD2,TIAM2,TMEM25 |
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* Co-Expression network figures were drawn using R package igraph. Only the top 20 genes with the highest correlations were shown. Red circle: input gene, orange circle: cell metabolism gene, sky circle: other gene |
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Pharmacological Information for KIFC3 |
There's no related Drug. |
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Cross referenced IDs for KIFC3 |
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section |
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