Cancer Cell Metabolism Gene Database

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 348
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000252486; ENSP00000252486; ENSG00000130203.
Genome annotation databasesGeneID 348; -.
Genome annotation databasesKEGG hsa:348; -.
Genome annotation databasesUCSC uc002pab.3; human.
Sequence databasesCCDS CCDS12647.1; -.
Sequence databasesEMBL M12529; AAB59518.1; -; mRNA.
Sequence databasesEMBL K00396; AAB59546.1; -; mRNA.
Sequence databasesEMBL M10065; AAB59397.1; -; Genomic_DNA.
Sequence databasesEMBL AF050154; AAD02505.1; -; Genomic_DNA.
Sequence databasesEMBL AF261279; AAG27089.1; -; Genomic_DNA.
Sequence databasesEMBL AK314898; BAG37412.1; -; mRNA.
Sequence databasesEMBL FJ525876; ACN81314.1; -; Genomic_DNA.
Sequence databasesEMBL BC003557; AAH03557.1; -; mRNA.
Sequence databasesEMBL AB035149; BAA96080.1; -; Genomic_DNA.
Sequence databasesPIR A92478; LPHUE.
Sequence databasesRefSeq NP_000032.1; NM_000041.2.
Sequence databasesUniGene Hs.654439; -.
Polymorphism databasesDMDM 114039; -.
Gene expression databasesBgee P02649; -.
Gene expression databasesCleanEx HS_APOE; -.
Gene expression databasesExpressionAtlas P02649; baseline and differential.
Gene expression databasesGenevestigator P02649; -.
OntologiesGO GO:0072562; C:blood microparticle; IDA:UniProt.
OntologiesGO GO:0042627; C:chylomicron; IDA:BHF-UCL.
OntologiesGO GO:0005737; C:cytoplasm; TAS:UniProtKB.
OntologiesGO GO:0030425; C:dendrite; NAS:BHF-UCL.
OntologiesGO GO:0005769; C:early endosome; TAS:Reactome.
OntologiesGO GO:0071682; C:endocytic vesicle lumen; TAS:Reactome.
OntologiesGO GO:0031012; C:extracellular matrix; IDA:UniProtKB.
OntologiesGO GO:0005576; C:extracellular region; TAS:Reactome.
OntologiesGO GO:0005615; C:extracellular space; IDA:BHF-UCL.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
OntologiesGO GO:0031232; C:extrinsic component of external side of plasma membrane; IEA:Ensembl.
OntologiesGO GO:0005794; C:Golgi apparatus; IEA:Ensembl.
OntologiesGO GO:0034364; C:high-density lipoprotein particle; IDA:BHF-UCL.
OntologiesGO GO:0034363; C:intermediate-density lipoprotein particle; IDA:BHF-UCL.
OntologiesGO GO:0005770; C:late endosome; IEA:Ensembl.
OntologiesGO GO:0034362; C:low-density lipoprotein particle; IDA:BHF-UCL.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0043025; C:neuronal cell body; NAS:BHF-UCL.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProt.
OntologiesGO GO:0005886; C:plasma membrane; TAS:Reactome.
OntologiesGO GO:0034361; C:very-low-density lipoprotein particle; IDA:BHF-UCL.
OntologiesGO GO:0031982; C:vesicle; IDA:UniProtKB.
OntologiesGO GO:0016209; F:antioxidant activity; IDA:BHF-UCL.
OntologiesGO GO:0001540; F:beta-amyloid binding; IDA:UniProtKB.
OntologiesGO GO:0017127; F:cholesterol transporter activity; IEA:Ensembl.
OntologiesGO GO:0008201; F:heparin binding; IDA:BHF-UCL.
OntologiesGO GO:0046848; F:hydroxyapatite binding; IEA:Ensembl.
OntologiesGO GO:0042802; F:identical protein binding; IDA:BHF-UCL.
OntologiesGO GO:0008289; F:lipid binding; IDA:UniProtKB.
OntologiesGO GO:0005319; F:lipid transporter activity; IDA:BHF-UCL.
OntologiesGO GO:0071813; F:lipoprotein particle binding; IEA:Ensembl.
OntologiesGO GO:0050750; F:low-density lipoprotein particle receptor binding; IDA:BHF-UCL.
OntologiesGO GO:0046911; F:metal chelating activity; IDA:BHF-UCL.
OntologiesGO GO:0060228; F:phosphatidylcholine-sterol O-acyltransferase activator activity; IDA:BHF-UCL.
OntologiesGO GO:0005543; F:phospholipid binding; IDA:BHF-UCL.
OntologiesGO GO:0042803; F:protein homodimerization activity; IPI:BHF-UCL.
OntologiesGO GO:0048156; F:tau protein binding; IPI:BHF-UCL.
OntologiesGO GO:0070326; F:very-low-density lipoprotein particle receptor binding; IDA:BHF-UCL.
OntologiesGO GO:0007568; P:aging; IEA:Ensembl.
OntologiesGO GO:0097113; P:alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0048844; P:artery morphogenesis; IEA:Ensembl.
OntologiesGO GO:0008219; P:cell death; IEA:UniProtKB-KW.
OntologiesGO GO:0006874; P:cellular calcium ion homeostasis; IEA:Ensembl.
OntologiesGO GO:0071397; P:cellular response to cholesterol; IEA:Ensembl.
OntologiesGO GO:0071363; P:cellular response to growth factor stimulus; IEA:Ensembl.
OntologiesGO GO:0071347; P:cellular response to interleukin-1; IEA:Ensembl.
OntologiesGO GO:0019934; P:cGMP-mediated signaling; IDA:BHF-UCL.
OntologiesGO GO:0006707; P:cholesterol catabolic process; IEA:Ensembl.
OntologiesGO GO:0033344; P:cholesterol efflux; IDA:BHF-UCL.
OntologiesGO GO:0042632; P:cholesterol homeostasis; IDA:BHF-UCL.
OntologiesGO GO:0008203; P:cholesterol metabolic process; IDA:BHF-UCL.
OntologiesGO GO:0034382; P:chylomicron remnant clearance; IMP:BHF-UCL.
OntologiesGO GO:0007010; P:cytoskeleton organization; TAS:UniProtKB.
OntologiesGO GO:0055089; P:fatty acid homeostasis; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0007186; P:G-protein coupled receptor signaling pathway; IDA:BHF-UCL.
OntologiesGO GO:0034380; P:high-density lipoprotein particle assembly; IDA:BHF-UCL.
OntologiesGO GO:0034384; P:high-density lipoprotein particle clearance; IDA:BHF-UCL.
OntologiesGO GO:0034375; P:high-density lipoprotein particle remodeling; IGI:BHF-UCL.
OntologiesGO GO:0046907; P:intracellular transport; TAS:UniProtKB.
OntologiesGO GO:0042158; P:lipoprotein biosynthetic process; IEA:Ensembl.
OntologiesGO GO:0042159; P:lipoprotein catabolic process; IEA:Ensembl.
OntologiesGO GO:0042157; P:lipoprotein metabolic process; TAS:Reactome.
OntologiesGO GO:0015909; P:long-chain fatty acid transport; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0034374; P:low-density lipoprotein particle remodeling; IEA:Ensembl.
OntologiesGO GO:0051651; P:maintenance of location in cell; IEA:Ensembl.
OntologiesGO GO:0097114; P:N-methyl-D-aspartate receptor clustering; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1902430; P:negative regulation of beta-amyloid formation; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0030195; P:negative regulation of blood coagulation; IDA:BHF-UCL.
OntologiesGO GO:0043537; P:negative regulation of blood vessel endothelial cell migration; IDA:BHF-UCL.
OntologiesGO GO:0045541; P:negative regulation of cholesterol biosynthetic process; IDA:BHF-UCL.
OntologiesGO GO:0090370; P:negative regulation of cholesterol efflux; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0061000; P:negative regulation of dendritic spine development; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1902951; P:negative regulation of dendritic spine maintenance; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0001937; P:negative regulation of endothelial cell proliferation; IDA:BHF-UCL.
OntologiesGO GO:0050728; P:negative regulation of inflammatory response; IC:BHF-UCL.
OntologiesGO GO:0051055; P:negative regulation of lipid biosynthetic process; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1903001; P:negative regulation of lipid transport across blood brain barrier; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0043407; P:negative regulation of MAP kinase activity; IDA:BHF-UCL.
OntologiesGO GO:0043524; P:negative regulation of neuron apoptotic process; IEA:Ensembl.
OntologiesGO GO:1901215; P:negative regulation of neuron death; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1902999; P:negative regulation of phospholipid efflux; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0010544; P:negative regulation of platelet activation; IDA:BHF-UCL.
OntologiesGO GO:1901627; P:negative regulation of postsynaptic membrane organization; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1901630; P:negative regulation of presynaptic membrane organization; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0007263; P:nitric oxide mediated signal transduction; IDA:BHF-UCL.
OntologiesGO GO:0048709; P:oligodendrocyte differentiation; IEA:Ensembl.
OntologiesGO GO:0014012; P:peripheral nervous system axon regeneration; IEA:Ensembl.
OntologiesGO GO:0033700; P:phospholipid efflux; IDA:BHF-UCL.
OntologiesGO GO:0007603; P:phototransduction, visible light; TAS:Reactome.
OntologiesGO GO:0045773; P:positive regulation of axon extension; IEA:Ensembl.
OntologiesGO GO:1902004; P:positive regulation of beta-amyloid formation; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0030828; P:positive regulation of cGMP biosynthetic process; IDA:BHF-UCL.
OntologiesGO GO:0010875; P:positive regulation of cholesterol efflux; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0010873; P:positive regulation of cholesterol esterification; IDA:BHF-UCL.
OntologiesGO GO:0060999; P:positive regulation of dendritic spine development; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1902952; P:positive regulation of dendritic spine maintenance; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0046889; P:positive regulation of lipid biosynthetic process; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1903002; P:positive regulation of lipid transport across blood brain barrier; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0032805; P:positive regulation of low-density lipoprotein particle receptor catabolic process; IDA:BHF-UCL.
OntologiesGO GO:0051044; P:positive regulation of membrane protein ectodomain proteolysis; IDA:BHF-UCL.
OntologiesGO GO:1902998; P:positive regulation of neurofibrillary tangle assembly; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1901216; P:positive regulation of neuron death; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0051000; P:positive regulation of nitric-oxide synthase activity; IDA:BHF-UCL.
OntologiesGO GO:1902995; P:positive regulation of phospholipid efflux; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1901628; P:positive regulation of postsynaptic membrane organization; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:1901631; P:positive regulation of presynaptic membrane organization; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0017038; P:protein import; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0006898; P:receptor-mediated endocytosis; IDA:BHF-UCL.
OntologiesGO GO:0030516; P:regulation of axon extension; TAS:UniProtKB.
OntologiesGO GO:1900221; P:regulation of beta-amyloid clearance; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0032489; P:regulation of Cdc42 protein signal transduction; IDA:BHF-UCL.
OntologiesGO GO:1901214; P:regulation of neuron death; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0048168; P:regulation of neuronal synaptic plasticity; TAS:UniProtKB.
OntologiesGO GO:1902947; P:regulation of tau-protein kinase activity; IDA:Alzheimers_University_of_Toronto.
OntologiesGO GO:0002021; P:response to dietary excess; IEA:Ensembl.
OntologiesGO GO:0045471; P:response to ethanol; IEA:Ensembl.
OntologiesGO GO:0032868; P:response to insulin; IEA:Ensembl.
OntologiesGO GO:0000302; P:response to reactive oxygen species; NAS:UniProtKB.
OntologiesGO GO:0032526; P:response to retinoic acid; IEA:Ensembl.
OntologiesGO GO:0001523; P:retinoid metabolic process; TAS:Reactome.
OntologiesGO GO:0043691; P:reverse cholesterol transport; IDA:BHF-UCL.
OntologiesGO GO:0044281; P:small molecule metabolic process; TAS:Reactome.
OntologiesGO GO:0007271; P:synaptic transmission, cholinergic; TAS:UniProtKB.
OntologiesGO GO:0006641; P:triglyceride metabolic process; IDA:BHF-UCL.
OntologiesGO GO:0042311; P:vasodilation; IEA:Ensembl.
OntologiesGO GO:0034447; P:very-low-density lipoprotein particle clearance; IDA:BHF-UCL.
OntologiesGO GO:0034372; P:very-low-density lipoprotein particle remodeling; IDA:BHF-UCL.
Proteomic databasesMaxQB P02649; -.
Proteomic databasesPaxDb P02649; -.
Proteomic databasesPeptideAtlas P02649; -.
Proteomic databasesPRIDE P02649; -.
Family and domain databasesInterPro IPR000074; ApoA1_A4_E.
Family and domain databasesPfam PF01442; Apolipoprotein; 1.
PTM databasesPhosphoSite P02649; -.
Protein-protein interaction databasesBioGrid 106845; 53.
Protein-protein interaction databasesDIP DIP-1120N; -.
Protein-protein interaction databasesIntAct P02649; 26.
Protein-protein interaction databasesMINT MINT-4999641; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000252486; -.
Enzyme and pathway databasesReactome REACT_13621; HDL-mediated lipid transport.
Enzyme and pathway databasesReactome REACT_163699; Scavenging by Class A Receptors.
Enzyme and pathway databasesReactome REACT_24968; Retinoid metabolism and transport.
Enzyme and pathway databasesReactome REACT_6841; Chylomicron-mediated lipid transport.
2D gel databasesDOSAC-COBS-2DPAGE P02649; -.
2D gel databasesSWISS-2DPAGE P02649; -.
3D structure databasesDisProt DP00355; -.
3D structure databasesPDB 1B68; X-ray; 2.00 A; A=19-209.
3D structure databasesPDB 1BZ4; X-ray; 1.85 A; A=40-183.
3D structure databasesPDB 1EA8; X-ray; 1.95 A; A=19-209.
3D structure databasesPDB 1GS9; X-ray; 1.70 A; A=19-183.
3D structure databasesPDB 1H7I; X-ray; 1.90 A; A=19-209.
3D structure databasesPDB 1LE2; X-ray; 3.00 A; A=41-184.
3D structure databasesPDB 1LE4; X-ray; 2.50 A; A=41-184.
3D structure databasesPDB 1LPE; X-ray; 2.25 A; A=41-184.
3D structure databasesPDB 1NFN; X-ray; 1.80 A; A=19-209.
3D structure databasesPDB 1NFO; X-ray; 2.00 A; A=19-209.
3D structure databasesPDB 1OEF; NMR; -; A=281-304.
3D structure databasesPDB 1OEG; NMR; -; A=285-307.
3D structure databasesPDB 1OR2; X-ray; 2.50 A; A=19-183.
3D structure databasesPDB 1OR3; X-ray; 1.73 A; A=19-183.
3D structure databasesPDB 2KC3; NMR; -; A=19-201.
3D structure databasesPDB 2KNY; NMR; -; A=147-167.
3D structure databasesPDB 2L7B; NMR; -; A=19-317.
3D structure databasesPDBsum 1B68; -.
3D structure databasesPDBsum 1BZ4; -.
3D structure databasesPDBsum 1EA8; -.
3D structure databasesPDBsum 1GS9; -.
3D structure databasesPDBsum 1H7I; -.
3D structure databasesPDBsum 1LE2; -.
3D structure databasesPDBsum 1LE4; -.
3D structure databasesPDBsum 1LPE; -.
3D structure databasesPDBsum 1NFN; -.
3D structure databasesPDBsum 1NFO; -.
3D structure databasesPDBsum 1OEF; -.
3D structure databasesPDBsum 1OEG; -.
3D structure databasesPDBsum 1OR2; -.
3D structure databasesPDBsum 1OR3; -.
3D structure databasesPDBsum 2KC3; -.
3D structure databasesPDBsum 2KNY; -.
3D structure databasesPDBsum 2L7B; -.
3D structure databasesProteinModelPortal P02649; -.
3D structure databasesSMR P02649; 19-317.
Protocols and materials databasesDNASU 348; -.
Phylogenomic databaseseggNOG NOG44867; -.
Phylogenomic databasesGeneTree ENSGT00730000111315; -.
Phylogenomic databasesHOGENOM HOG000034006; -.
Phylogenomic databasesHOVERGEN HBG010582; -.
Phylogenomic databasesInParanoid P02649; -.
Phylogenomic databasesKO K04524; -.
Phylogenomic databasesOMA PLQERAQ; -.
Phylogenomic databasesOrthoDB EOG793B87; -.
Phylogenomic databasesPhylomeDB P02649; -.
Phylogenomic databasesTreeFam TF334458; -.
Organism-specific databasesCTD 348; -.
Organism-specific databasesGeneCards GC19P045408; -.
Organism-specific databasesHGNC HGNC:613; APOE.
Organism-specific databasesHPA CAB008363; -.
Organism-specific databasesMIM 104310; phenotype.
Organism-specific databasesMIM 107741; gene+phenotype.
Organism-specific databasesMIM 143890; phenotype.
Organism-specific databasesMIM 269600; phenotype.
Organism-specific databasesMIM 611771; phenotype.
Organism-specific databasesneXtProt NX_P02649; -.
Organism-specific databasesOrphanet 238616; Alzheimer disease.
Organism-specific databasesOrphanet 1648; Dementia with Lewy body.
Organism-specific databasesOrphanet 406; Heterozygous familial hypercholesterolemia.
Organism-specific databasesOrphanet 412; Hyperlipoproteinemia type 3.
Organism-specific databasesOrphanet 329481; Lipoprotein glomerulopathy.
Organism-specific databasesOrphanet 158029; Sea-blue histiocytosis.
Organism-specific databasesPharmGKB PA55; -.
ChemistryDrugBank DB00062; Human Serum Albumin.
ChemistryDrugBank DB00064; Serum albumin iodonated.
OtherChiTaRS APOE; human.
OtherEvolutionaryTrace P02649; -.
OtherGeneWiki Apolipoprotein_E; -.
OtherGenomeRNAi 348; -.
OtherNextBio 1435; -.
OtherPMAP-CutDB P02649; -.
OtherPRO PR:P02649; -.



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