Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 29883
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000361272; ENSP00000355279; ENSG00000198791. [Q9UIV1-1]
Genome annotation databasesEnsembl ENST00000523917; ENSP00000429093; ENSG00000198791. [Q9UIV1-2]
Genome annotation databasesGeneID 29883; -.
Genome annotation databasesKEGG hsa:29883; -.
Genome annotation databasesUCSC uc003wxf.1; human. [Q9UIV1-1]
Genome annotation databasesUCSC uc003wxh.1; human.
Sequence databasesCCDS CCDS55202.1; -. [Q9UIV1-2]
Sequence databasesCCDS CCDS6000.2; -. [Q9UIV1-1]
Sequence databasesEMBL L46722; AAF01500.1; ALT_FRAME; mRNA.
Sequence databasesEMBL AF086915; AAP97145.1; -; mRNA.
Sequence databasesEMBL AK021808; BAG51053.1; -; mRNA.
Sequence databasesEMBL AK023466; BAG51197.1; -; mRNA.
Sequence databasesEMBL AC091050; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL CH471080; EAW63820.1; -; Genomic_DNA.
Sequence databasesEMBL CH471080; EAW63821.1; -; Genomic_DNA.
Sequence databasesEMBL CH471080; EAW63822.1; -; Genomic_DNA.
Sequence databasesEMBL CH471080; EAW63823.1; -; Genomic_DNA.
Sequence databasesEMBL BC060852; AAH60852.1; -; mRNA.
Sequence databasesEMBL BC070187; AAH70187.1; -; mRNA.
Sequence databasesRefSeq NP_037486.2; NM_013354.5. [Q9UIV1-1]
Sequence databasesRefSeq NP_473367.2; NM_054026.2. [Q9UIV1-2]
Sequence databasesRefSeq XP_005273538.1; XM_005273481.1. [Q9UIV1-1]
Sequence databasesUniGene Hs.645009; -.
Sequence databasesUniGene Hs.729775; -.
Polymorphism databasesDMDM 41713629; -.
Gene expression databasesBgee Q9UIV1; -.
Gene expression databasesCleanEx HS_CNOT7; -.
Gene expression databasesExpressionAtlas Q9UIV1; baseline and differential.
Gene expression databasesGenevestigator Q9UIV1; -.
OntologiesGO GO:0030014; C:CCR4-NOT complex; IDA:UniProtKB.
OntologiesGO GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0000175; F:3'-5'-exoribonuclease activity; IDA:UniProtKB.
OntologiesGO GO:0004532; F:exoribonuclease activity; IDA:UniProtKB.
OntologiesGO GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
OntologiesGO GO:0004535; F:poly(A)-specific ribonuclease activity; IDA:UniProtKB.
OntologiesGO GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
OntologiesGO GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.
OntologiesGO GO:0004871; F:signal transducer activity; TAS:ProtInc.
OntologiesGO GO:0005975; P:carbohydrate metabolic process; TAS:ProtInc.
OntologiesGO GO:0033962; P:cytoplasmic mRNA processing body assembly; IEA:Ensembl.
OntologiesGO GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IEA:Ensembl.
OntologiesGO GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; IDA:UniProtKB.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0035195; P:gene silencing by miRNA; TAS:UniProtKB.
OntologiesGO GO:0031047; P:gene silencing by RNA; ISS:UniProtKB.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0008285; P:negative regulation of cell proliferation; IDA:UniProtKB.
OntologiesGO GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.
OntologiesGO GO:0008284; P:positive regulation of cell proliferation; IMP:UniProtKB.
OntologiesGO GO:1900153; P:positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; IMP:UniProtKB.
OntologiesGO GO:0060213; P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; IMP:UniProtKB.
OntologiesGO GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IEA:Ensembl.
OntologiesGO GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0090503; P:RNA phosphodiester bond hydrolysis, exonucleolytic; IDA:GOC.
OntologiesGO GO:0007165; P:signal transduction; TAS:ProtInc.
OntologiesGO GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
Proteomic databasesMaxQB Q9UIV1; -.
Proteomic databasesPaxDb Q9UIV1; -.
Proteomic databasesPRIDE Q9UIV1; -.
Family and domain databasesGene3D 3.30.420.10; -; 1.
Family and domain databasesInterPro IPR006941; RNase_CAF1.
Family and domain databasesInterPro IPR012337; RNaseH-like_dom.
Family and domain databasesPfam PF04857; CAF1; 1.
Family and domain databasesSUPFAM SSF53098; SSF53098; 1.
PTM databasesPhosphoSite Q9UIV1; -.
Protein-protein interaction databasesBioGrid 118938; 34.
Protein-protein interaction databasesDIP DIP-41902N; -.
Protein-protein interaction databasesIntAct Q9UIV1; 22.
Protein-protein interaction databasesMINT MINT-155676; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000355279; -.
Enzyme and pathway databasesReactome REACT_20514; Deadenylation of mRNA.
3D structure databasesPDB 2D5R; X-ray; 2.50 A; A=11-262.
3D structure databasesPDB 4GMJ; X-ray; 2.70 A; B/D/F=1-285.
3D structure databasesPDBsum 2D5R; -.
3D structure databasesPDBsum 4GMJ; -.
3D structure databasesProteinModelPortal Q9UIV1; -.
3D structure databasesSMR Q9UIV1; 11-262.
Protocols and materials databasesDNASU 29883; -.
Phylogenomic databaseseggNOG COG5228; -.
Phylogenomic databasesGeneTree ENSGT00390000000080; -.
Phylogenomic databasesHOGENOM HOG000173077; -.
Phylogenomic databasesHOVERGEN HBG051044; -.
Phylogenomic databasesInParanoid Q9UIV1; -.
Phylogenomic databasesKO K12581; -.
Phylogenomic databasesOMA CIYDIKY; -.
Phylogenomic databasesOrthoDB EOG74BJSP; -.
Phylogenomic databasesPhylomeDB Q9UIV1; -.
Phylogenomic databasesTreeFam TF314185; -.
Organism-specific databasesCTD 29883; -.
Organism-specific databasesGeneCards GC08M017086; -.
Organism-specific databasesHGNC HGNC:14101; CNOT7.
Organism-specific databasesHPA HPA051861; -.
Organism-specific databasesMIM 604913; gene.
Organism-specific databasesneXtProt NX_Q9UIV1; -.
Organism-specific databasesPharmGKB PA26678; -.
OtherChiTaRS CNOT7; human.
OtherEvolutionaryTrace Q9UIV1; -.
OtherGeneWiki CNOT7; -.
OtherGenomeRNAi 29883; -.
OtherNextBio 52417; -.
OtherPRO PR:Q9UIV1; -.



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