Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB






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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 8841
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories.
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000305264; ENSP00000302967; ENSG00000171720. [O15379-1]
Genome annotation databasesGeneID 8841; -.
Genome annotation databasesKEGG hsa:8841; -.
Genome annotation databasesUCSC uc003lle.1; human. [O15379-1]
Sequence databasesCCDS CCDS4264.1; -. [O15379-1]
Sequence databasesEMBL U66914; AAC52038.1; -; mRNA.
Sequence databasesEMBL U75697; AAB88241.1; -; mRNA.
Sequence databasesEMBL U75696; AAB88240.1; -; mRNA.
Sequence databasesEMBL AF005482; AAB87752.1; -; mRNA.
Sequence databasesEMBL AF039703; AAC98927.1; -; mRNA.
Sequence databasesEMBL AF059650; AAC26509.1; -; Genomic_DNA.
Sequence databasesEMBL CH471062; EAW61915.1; -; Genomic_DNA.
Sequence databasesEMBL CH471062; EAW61916.1; -; Genomic_DNA.
Sequence databasesEMBL BC000614; AAH00614.1; -; mRNA.
Sequence databasesEMBL AF053138; AAC08351.1; -; Genomic_DNA.
Sequence databasesEMBL AF053137; AAC08351.1; JOINED; Genomic_DNA.
Sequence databasesEMBL AF053139; AAC08352.1; -; Genomic_DNA.
Sequence databasesPIR JC5834; JC5834.
Sequence databasesRefSeq NP_003874.2; NM_003883.3. [O15379-1]
Sequence databasesUniGene Hs.519632; -.
Gene expression databasesBgee O15379; -.
Gene expression databasesCleanEx HS_HDAC3; -.
Gene expression databasesExpressionAtlas O15379; baseline and differential.
Gene expression databasesGenevestigator O15379; -.
OntologiesGO GO:0005737; C:cytoplasm; TAS:UniProtKB.
OntologiesGO GO:0000118; C:histone deacetylase complex; TAS:UniProtKB.
OntologiesGO GO:0005654; C:nucleoplasm; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0005876; C:spindle microtubule; IDA:UniProtKB.
OntologiesGO GO:0017053; C:transcriptional repressor complex; IDA:UniProtKB.
OntologiesGO GO:0003682; F:chromatin binding; IDA:UniProtKB.
OntologiesGO GO:0031490; F:chromatin DNA binding; IEA:Ensembl.
OntologiesGO GO:0030332; F:cyclin binding; IPI:UniProtKB.
OntologiesGO GO:0019899; F:enzyme binding; IPI:UniProtKB.
OntologiesGO GO:0004407; F:histone deacetylase activity; IMP:UniProtKB.
OntologiesGO GO:0042826; F:histone deacetylase binding; IPI:BHF-UCL.
OntologiesGO GO:0032041; F:NAD-dependent histone deacetylase activity (H3-K14 specific); IEA:UniProtKB-EC.
OntologiesGO GO:0097372; F:NAD-dependent histone deacetylase activity (H3-K18 specific); IEA:UniProtKB-EC.
OntologiesGO GO:0046969; F:NAD-dependent histone deacetylase activity (H3-K9 specific); IEA:UniProtKB-EC.
OntologiesGO GO:0046970; F:NAD-dependent histone deacetylase activity (H4-K16 specific); IEA:UniProtKB-EC.
OntologiesGO GO:0033558; F:protein deacetylase activity; IDA:UniProtKB.
OntologiesGO GO:0003714; F:transcription corepressor activity; IDA:UniProtKB.
OntologiesGO GO:0008134; F:transcription factor binding; IPI:UniProtKB.
OntologiesGO GO:0044255; P:cellular lipid metabolic process; TAS:Reactome.
OntologiesGO GO:0016568; P:chromatin modification; TAS:UniProtKB.
OntologiesGO GO:0032922; P:circadian regulation of gene expression; IEA:Ensembl.
OntologiesGO GO:0043066; P:negative regulation of apoptotic process; TAS:ProtInc.
OntologiesGO GO:0045786; P:negative regulation of cell cycle; TAS:Reactome.
OntologiesGO GO:0046329; P:negative regulation of JNK cascade; IMP:UniProtKB.
OntologiesGO GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
OntologiesGO GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:UniProtKB.
OntologiesGO GO:0048011; P:neurotrophin TRK receptor signaling pathway; TAS:Reactome.
OntologiesGO GO:0007219; P:Notch signaling pathway; TAS:Reactome.
OntologiesGO GO:0006476; P:protein deacetylation; IDA:UniProtKB.
OntologiesGO GO:0007346; P:regulation of mitotic cell cycle; IEA:Ensembl.
OntologiesGO GO:0040014; P:regulation of multicellular organism growth; IEA:Ensembl.
OntologiesGO GO:0044281; P:small molecule metabolic process; TAS:Reactome.
OntologiesGO GO:0051225; P:spindle assembly; IMP:UniProtKB.
OntologiesGO GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
Proteomic databasesMaxQB O15379; -.
Proteomic databasesPaxDb O15379; -.
Proteomic databasesPRIDE O15379; -.
Family and domain databasesGene3D 3.40.800.20; -; 1.
Family and domain databasesInterPro IPR000286; His_deacetylse.
Family and domain databasesInterPro IPR003084; His_deacetylse_1.
Family and domain databasesInterPro IPR023801; His_deacetylse_dom.
Family and domain databasesPANTHER PTHR10625; PTHR10625; 1.
Family and domain databasesPfam PF00850; Hist_deacetyl; 1.
Family and domain databasesPIRSF PIRSF037913; His_deacetylse_1; 1.
Family and domain databasesPRINTS PR01270; HDASUPER.
Family and domain databasesPRINTS PR01271; HISDACETLASE.
PTM databasesPhosphoSite O15379; -.
Protein-protein interaction databasesBioGrid 114368; 257.
Protein-protein interaction databasesDIP DIP-24253N; -.
Protein-protein interaction databasesIntAct O15379; 62.
Protein-protein interaction databasesMINT MINT-196172; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000302967; -.
Enzyme and pathway databasesReactome REACT_111118; BMAL1:CLOCK,NPAS2 activates circadian gene expression.
Enzyme and pathway databasesReactome REACT_116145; PPARA activates gene expression.
Enzyme and pathway databasesReactome REACT_118659; RORA activates circadian gene expression.
Enzyme and pathway databasesReactome REACT_118780; NOTCH1 Intracellular Domain Regulates Transcription.
Enzyme and pathway databasesReactome REACT_118789; REV-ERBA represses gene expression.
Enzyme and pathway databasesReactome REACT_13695; p75NTR negatively regulates cell cycle via SC1.
Enzyme and pathway databasesReactome REACT_160243; Constitutive Signaling by NOTCH1 PEST Domain Mutants.
Enzyme and pathway databasesReactome REACT_160254; Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants.
Enzyme and pathway databasesReactome REACT_19241; Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha).
Enzyme and pathway databasesReactome REACT_200608; Transcriptional activation of mitochondrial biogenesis.
Enzyme and pathway databasesReactome REACT_228222; HDACs deacetylate histones.
Enzyme and pathway databasesReactome REACT_24941; Circadian Clock.
Enzyme and pathway databasesReactome REACT_27161; Transcriptional regulation of white adipocyte differentiation.
Enzyme and pathway databasesSABIO-RK O15379; -.
Enzyme and pathway databasesSignaLink O15379; -.
3D structure databasesPDB 4A69; X-ray; 2.06 A; A/B=1-376.
3D structure databasesPDBsum 4A69; -.
3D structure databasesProteinModelPortal O15379; -.
3D structure databasesSMR O15379; 2-370.
Protocols and materials databasesDNASU 8841; -.
Phylogenomic databaseseggNOG COG0123; -.
Phylogenomic databasesGeneTree ENSGT00530000062889; -.
Phylogenomic databasesHOGENOM HOG000225180; -.
Phylogenomic databasesHOVERGEN HBG057112; -.
Phylogenomic databasesInParanoid O15379; -.
Phylogenomic databasesKO K11404; -.
Phylogenomic databasesOMA NFHYGPG; -.
Phylogenomic databasesOrthoDB EOG7DNNTW; -.
Phylogenomic databasesPhylomeDB O15379; -.
Phylogenomic databasesTreeFam TF352182; -.
Organism-specific databasesCTD 8841; -.
Organism-specific databasesGeneCards GC05M140980; -.
Organism-specific databasesHGNC HGNC:4854; HDAC3.
Organism-specific databasesHPA CAB005583; -.
Organism-specific databasesMIM 605166; gene.
Organism-specific databasesneXtProt NX_O15379; -.
Organism-specific databasesPharmGKB PA29228; -.
ChemistryBindingDB O15379; -.
ChemistryChEMBL CHEMBL3038484; -.
ChemistryDrugBank DB02546; Vorinostat.
ChemistryGuidetoPHARMACOLOGY 2617; -.
OtherChiTaRS HDAC3; human.
OtherGeneWiki HDAC3; -.
OtherGenomeRNAi 8841; -.
OtherNextBio 33190; -.
OtherPMAP-CutDB O15379; -.
OtherPRO PR:O15379; -.

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