Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB






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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 27257
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories.
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000311351; ENSP00000310596; ENSG00000175324.
Genome annotation databasesGeneID 27257; -.
Genome annotation databasesKEGG hsa:27257; -.
Genome annotation databasesUCSC uc003xkw.3; human.
Sequence databasesCCDS CCDS6103.1; -.
Sequence databasesEMBL AF000177; AAB62189.1; -; mRNA.
Sequence databasesEMBL AJ238094; CAB45865.1; -; mRNA.
Sequence databasesEMBL AK312159; BAG35093.1; -; mRNA.
Sequence databasesEMBL CH471080; EAW63332.1; -; Genomic_DNA.
Sequence databasesEMBL BC001767; AAH01767.1; -; mRNA.
Sequence databasesRefSeq NP_055277.1; NM_014462.2.
Sequence databasesUniGene Hs.425311; -.
Gene expression databasesBgee O15116; -.
Gene expression databasesCleanEx HS_LSM1; -.
Gene expression databasesExpressionAtlas O15116; baseline and differential.
Gene expression databasesGenevestigator O15116; -.
OntologiesGO GO:0005737; C:cytoplasm; IDA:MGI.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; IDA:MGI.
OntologiesGO GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0071044; P:histone mRNA catabolic process; IMP:UniProtKB.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0006397; P:mRNA processing; TAS:ProtInc.
OntologiesGO GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0008380; P:RNA splicing; TAS:ProtInc.
OntologiesGO GO:0000375; P:RNA splicing, via transesterification reactions; TAS:UniProtKB.
Proteomic databasesMaxQB O15116; -.
Proteomic databasesPaxDb O15116; -.
Proteomic databasesPeptideAtlas O15116; -.
Proteomic databasesPRIDE O15116; -.
Family and domain databasesInterPro IPR010920; LSM_dom.
Family and domain databasesInterPro IPR001163; Ribonucl_LSM.
Family and domain databasesInterPro IPR006649; Ribonucl_LSM_euk/arc.
Family and domain databasesPfam PF01423; LSM; 1.
Family and domain databasesSMART SM00651; Sm; 1.
Family and domain databasesSUPFAM SSF50182; SSF50182; 1.
PTM databasesPhosphoSite O15116; -.
Protein-protein interaction databasesBioGrid 118104; 34.
Protein-protein interaction databasesDIP DIP-31130N; -.
Protein-protein interaction databasesIntAct O15116; 20.
Protein-protein interaction databasesMINT MINT-1036791; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000310596; -.
Enzyme and pathway databasesReactome REACT_20518; mRNA decay by 5' to 3' exoribonuclease.
3D structure databasesProteinModelPortal O15116; -.
3D structure databasesSMR O15116; 7-123.
Protocols and materials databasesDNASU 27257; -.
Phylogenomic databaseseggNOG NOG236501; -.
Phylogenomic databasesGeneTree ENSGT00730000111133; -.
Phylogenomic databasesHOGENOM HOG000223544; -.
Phylogenomic databasesHOVERGEN HBG027238; -.
Phylogenomic databasesInParanoid O15116; -.
Phylogenomic databasesKO K12620; -.
Phylogenomic databasesOMA FHQTVER; -.
Phylogenomic databasesOrthoDB EOG7N8ZXQ; -.
Phylogenomic databasesPhylomeDB O15116; -.
Phylogenomic databasesTreeFam TF105846; -.
Organism-specific databasesCTD 27257; -.
Organism-specific databasesGeneCards GC08M038020; -.
Organism-specific databasesHGNC HGNC:20472; LSM1.
Organism-specific databasesHPA HPA024601; -.
Organism-specific databasesMIM 607281; gene.
Organism-specific databasesneXtProt NX_O15116; -.
Organism-specific databasesPharmGKB PA134864226; -.
OtherChiTaRS LSM1; human.
OtherGeneWiki LSM1; -.
OtherGenomeRNAi 27257; -.
OtherNextBio 50202; -.
OtherPRO PR:O15116; -.

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