Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 9572
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000246672; ENSP00000246672; ENSG00000126368.
Genome annotation databasesGeneID 9572; -.
Genome annotation databasesKEGG hsa:9572; -.
Genome annotation databasesUCSC uc002htz.3; human.
Sequence databasesCCDS CCDS11361.1; -.
Sequence databasesEMBL M24898; AAA52335.1; -; mRNA.
Sequence databasesEMBL M24900; AAA52332.1; -; mRNA.
Sequence databasesEMBL X55066; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL X55067; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL X72631; CAB53540.1; -; mRNA.
Sequence databasesEMBL BC047875; AAH47875.1; -; mRNA.
Sequence databasesEMBL BC056148; AAH56148.1; -; mRNA.
Sequence databasesEMBL M34339; AAA36561.1; -; mRNA.
Sequence databasesEMBL M34340; AAA36562.2; -; mRNA.
Sequence databasesPIR A32286; A32608.
Sequence databasesRefSeq NP_068370.1; NM_021724.4.
Sequence databasesUniGene Hs.592130; -.
Sequence databasesUniGene Hs.724; -.
Polymorphism databasesDMDM 119100; -.
Gene expression databasesBgee P20393; -.
Gene expression databasesCleanEx HS_NR1D1; -.
Gene expression databasesExpressionAtlas P20393; baseline and differential.
Gene expression databasesGenevestigator P20393; -.
OntologiesGO GO:0005737; C:cytoplasm; ISS:UniProtKB.
OntologiesGO GO:0030425; C:dendrite; ISS:UniProtKB.
OntologiesGO GO:0043197; C:dendritic spine; ISS:UniProtKB.
OntologiesGO GO:0000790; C:nuclear chromatin; IDA:BHF-UCL.
OntologiesGO GO:0005654; C:nucleoplasm; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; ISS:UniProtKB.
OntologiesGO GO:0001046; F:core promoter sequence-specific DNA binding; IDA:UniProtKB.
OntologiesGO GO:0020037; F:heme binding; IDA:UniProtKB.
OntologiesGO GO:0004879; F:ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity; TAS:ProtInc.
OntologiesGO GO:0000978; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding; IMP:NTNU_SB.
OntologiesGO GO:0001078; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription; IDA:NTNU_SB.
OntologiesGO GO:0003707; F:steroid hormone receptor activity; TAS:ProtInc.
OntologiesGO GO:0003714; F:transcription corepressor activity; TAS:ProtInc.
OntologiesGO GO:0001222; F:transcription corepressor binding; IDA:UniProtKB.
OntologiesGO GO:0044212; F:transcription regulatory region DNA binding; IDA:BHF-UCL.
OntologiesGO GO:0008270; F:zinc ion binding; IEA:InterPro.
OntologiesGO GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
OntologiesGO GO:0071222; P:cellular response to lipopolysaccharide; IMP:BHF-UCL.
OntologiesGO GO:0032922; P:circadian regulation of gene expression; ISS:UniProtKB.
OntologiesGO GO:0060086; P:circadian temperature homeostasis; ISS:UniProtKB.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0005978; P:glycogen biosynthetic process; ISS:UniProtKB.
OntologiesGO GO:0030522; P:intracellular receptor signaling pathway; TAS:GOC.
OntologiesGO GO:0010871; P:negative regulation of receptor biosynthetic process; IMP:BHF-UCL.
OntologiesGO GO:0034144; P:negative regulation of toll-like receptor 4 signaling pathway; IMP:BHF-UCL.
OntologiesGO GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:NTNU_SB.
OntologiesGO GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:UniProtKB.
OntologiesGO GO:0070859; P:positive regulation of bile acid biosynthetic process; ISS:UniProtKB.
OntologiesGO GO:0045893; P:positive regulation of transcription, DNA-templated; ISS:UniProtKB.
OntologiesGO GO:0010498; P:proteasomal protein catabolic process; ISS:UniProtKB.
OntologiesGO GO:2000188; P:regulation of cholesterol homeostasis; ISS:UniProtKB.
OntologiesGO GO:0042752; P:regulation of circadian rhythm; ISS:UniProtKB.
OntologiesGO GO:0045598; P:regulation of fat cell differentiation; ISS:UniProtKB.
OntologiesGO GO:0035947; P:regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter; IMP:UniProtKB.
OntologiesGO GO:0061178; P:regulation of insulin secretion involved in cellular response to glucose stimulus; ISS:UniProtKB.
OntologiesGO GO:0019216; P:regulation of lipid metabolic process; ISS:UniProtKB.
OntologiesGO GO:0061469; P:regulation of type B pancreatic cell proliferation; ISS:UniProtKB.
OntologiesGO GO:0044321; P:response to leptin; ISS:UniProtKB.
OntologiesGO GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.
Proteomic databasesMaxQB P20393; -.
Proteomic databasesPaxDb P20393; -.
Proteomic databasesPRIDE P20393; -.
Family and domain databasesGene3D 1.10.565.10; -; 2.
Family and domain databasesGene3D 3.30.50.10; -; 1.
Family and domain databasesInterPro IPR008946; Nucl_hormone_rcpt_ligand-bd.
Family and domain databasesInterPro IPR000536; Nucl_hrmn_rcpt_lig-bd_core.
Family and domain databasesInterPro IPR001723; Str_hrmn_rcpt.
Family and domain databasesInterPro IPR001628; Znf_hrmn_rcpt.
Family and domain databasesInterPro IPR013088; Znf_NHR/GATA.
Family and domain databasesPfam PF00104; Hormone_recep; 1.
Family and domain databasesPfam PF00105; zf-C4; 1.
Family and domain databasesPRINTS PR00398; STRDHORMONER.
Family and domain databasesPRINTS PR00047; STROIDFINGER.
Family and domain databasesPROSITE PS00031; NUCLEAR_REC_DBD_1; 1.
Family and domain databasesPROSITE PS51030; NUCLEAR_REC_DBD_2; 1.
Family and domain databasesSMART SM00430; HOLI; 1.
Family and domain databasesSMART SM00399; ZnF_C4; 1.
Family and domain databasesSUPFAM SSF48508; SSF48508; 1.
PTM databasesPhosphoSite P20393; -.
Protein-protein interaction databasesBioGrid 114941; 10.
Protein-protein interaction databasesDIP DIP-48396N; -.
Protein-protein interaction databasesIntAct P20393; 2.
Protein-protein interaction databasesSTRING 9606.ENSP00000246672; -.
Enzyme and pathway databasesReactome REACT_111118; BMAL1:CLOCK,NPAS2 activates circadian gene expression.
Enzyme and pathway databasesReactome REACT_116145; PPARA activates gene expression.
Enzyme and pathway databasesReactome REACT_118659; RORA activates circadian gene expression.
Enzyme and pathway databasesReactome REACT_118789; REV-ERBA represses gene expression.
Enzyme and pathway databasesReactome REACT_15525; Nuclear Receptor transcription pathway.
Enzyme and pathway databasesReactome REACT_200608; Transcriptional activation of mitochondrial biogenesis.
Enzyme and pathway databasesReactome REACT_24941; Circadian Clock.
Enzyme and pathway databasesSignaLink P20393; -.
3D structure databasesPDB 1A6Y; X-ray; 2.30 A; A/B=123-216.
3D structure databasesPDB 1EF6; Model; -; A=281-301, B=430-614.
3D structure databasesPDB 1GA5; X-ray; 2.40 A; A/B/E/F=123-216.
3D structure databasesPDB 1HLZ; X-ray; 2.80 A; A/B=123-216.
3D structure databasesPDB 3N00; X-ray; 2.60 A; A=281-614.
3D structure databasesPDBsum 1A6Y; -.
3D structure databasesPDBsum 1EF6; -.
3D structure databasesPDBsum 1GA5; -.
3D structure databasesPDBsum 1HLZ; -.
3D structure databasesPDBsum 3N00; -.
3D structure databasesProteinModelPortal P20393; -.
3D structure databasesSMR P20393; 127-245, 416-611.
Protocols and materials databasesDNASU 9572; -.
Phylogenomic databaseseggNOG NOG324222; -.
Phylogenomic databasesGeneTree ENSGT00760000119049; -.
Phylogenomic databasesHOGENOM HOG000261691; -.
Phylogenomic databasesHOVERGEN HBG106790; -.
Phylogenomic databasesInParanoid P20393; -.
Phylogenomic databasesKO K03728; -.
Phylogenomic databasesOMA GTSPGNF; -.
Phylogenomic databasesOrthoDB EOG776SQ0; -.
Phylogenomic databasesPhylomeDB P20393; -.
Phylogenomic databasesTreeFam TF328382; -.
Organism-specific databasesCTD 9572; -.
Organism-specific databasesGeneCards GC17M038249; -.
Organism-specific databasesHGNC HGNC:7962; NR1D1.
Organism-specific databasesHPA HPA007935; -.
Organism-specific databasesMIM 602408; gene.
Organism-specific databasesneXtProt NX_P20393; -.
Organism-specific databasesPharmGKB PA31748; -.
ChemistryBindingDB P20393; -.
ChemistryChEMBL CHEMBL1961783; -.
ChemistryGuidetoPHARMACOLOGY 596; -.
OtherChiTaRS NR1D1; human.
OtherEvolutionaryTrace P20393; -.
OtherGeneWiki Rev-ErbA_alpha; -.
OtherGenomeRNAi 9572; -.
OtherNextBio 35899; -.
OtherPRO PR:P20393; -.



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