Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 5430
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000572844; ENSP00000461879; ENSG00000181222. [P24928-2]
Genome annotation databasesEnsembl ENST00000621442; ENSP00000483957; ENSG00000181222.
Genome annotation databasesGeneID 5430; -.
Genome annotation databasesKEGG hsa:5430; -.
Genome annotation databasesUCSC uc002ghf.4; human. [P24928-1]
Sequence databasesEMBL X63564; CAA45125.1; -; mRNA.
Sequence databasesEMBL X74874; CAA52862.1; -; Genomic_DNA.
Sequence databasesEMBL X74873; CAA52862.1; JOINED; Genomic_DNA.
Sequence databasesEMBL X74872; CAA52862.1; JOINED; Genomic_DNA.
Sequence databasesEMBL X74871; CAA52862.1; JOINED; Genomic_DNA.
Sequence databasesEMBL X74870; CAA52862.1; JOINED; Genomic_DNA.
Sequence databasesEMBL AC113189; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL CH471108; EAW90181.1; -; Genomic_DNA.
Sequence databasesEMBL BC067295; AAH67295.1; -; mRNA.
Sequence databasesEMBL BC137231; AAI37232.1; -; mRNA.
Sequence databasesPIR I38186; I38186.
Sequence databasesPIR S21054; S21054.
Sequence databasesRefSeq NP_000928.1; NM_000937.4.
Sequence databasesUniGene Hs.270017; -.
Polymorphism databasesDMDM 281185484; -.
Gene expression databasesBgee P24928; -.
Gene expression databasesCleanEx HS_POLR2A; -.
Gene expression databasesGenevestigator P24928; -.
OntologiesGO GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.
OntologiesGO GO:0005654; C:nucleoplasm; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0003677; F:DNA binding; NAS:UniProtKB.
OntologiesGO GO:0003899; F:DNA-directed RNA polymerase activity; NAS:UniProtKB.
OntologiesGO GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
OntologiesGO GO:0031625; F:ubiquitin protein ligase binding; IPI:BHF-UCL.
OntologiesGO GO:0006370; P:7-methylguanosine mRNA capping; TAS:Reactome.
OntologiesGO GO:0006281; P:DNA repair; TAS:Reactome.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0000398; P:mRNA splicing, via spliceosome; TAS:Reactome.
OntologiesGO GO:0006289; P:nucleotide-excision repair; TAS:Reactome.
OntologiesGO GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.
OntologiesGO GO:0006355; P:regulation of transcription, DNA-templated; NAS:UniProtKB.
OntologiesGO GO:0008380; P:RNA splicing; TAS:Reactome.
OntologiesGO GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.
OntologiesGO GO:0006366; P:transcription from RNA polymerase II promoter; IDA:UniProtKB.
OntologiesGO GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.
OntologiesGO GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.
OntologiesGO GO:0016032; P:viral process; TAS:Reactome.
Proteomic databasesMaxQB P24928; -.
Proteomic databasesPaxDb P24928; -.
Proteomic databasesPRIDE P24928; -.
Family and domain databasesInterPro IPR000722; RNA_pol_asu.
Family and domain databasesInterPro IPR000684; RNA_pol_II_repeat_euk.
Family and domain databasesInterPro IPR006592; RNA_pol_N.
Family and domain databasesInterPro IPR007080; RNA_pol_Rpb1_1.
Family and domain databasesInterPro IPR007066; RNA_pol_Rpb1_3.
Family and domain databasesInterPro IPR007083; RNA_pol_Rpb1_4.
Family and domain databasesInterPro IPR007081; RNA_pol_Rpb1_5.
Family and domain databasesInterPro IPR007075; RNA_pol_Rpb1_6.
Family and domain databasesInterPro IPR007073; RNA_pol_Rpb1_7.
Family and domain databasesPfam PF04997; RNA_pol_Rpb1_1; 1.
Family and domain databasesPfam PF00623; RNA_pol_Rpb1_2; 1.
Family and domain databasesPfam PF04983; RNA_pol_Rpb1_3; 1.
Family and domain databasesPfam PF05000; RNA_pol_Rpb1_4; 1.
Family and domain databasesPfam PF04998; RNA_pol_Rpb1_5; 1.
Family and domain databasesPfam PF04992; RNA_pol_Rpb1_6; 1.
Family and domain databasesPfam PF04990; RNA_pol_Rpb1_7; 1.
Family and domain databasesPfam PF05001; RNA_pol_Rpb1_R; 46.
Family and domain databasesPROSITE PS00115; RNA_POL_II_REPEAT; 42.
Family and domain databasesSMART SM00663; RPOLA_N; 1.
PTM databasesPhosphoSite P24928; -.
Protein-protein interaction databasesBioGrid 111426; 224.
Protein-protein interaction databasesDIP DIP-29011N; -.
Protein-protein interaction databasesIntAct P24928; 40.
Protein-protein interaction databasesMINT MINT-156582; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000314949; -.
Enzyme and pathway databasesReactome REACT_12417; MicroRNA (miRNA) biogenesis.
Enzyme and pathway databasesReactome REACT_125; Processing of Capped Intron-Containing Pre-mRNA.
Enzyme and pathway databasesReactome REACT_1470; mRNA Capping.
Enzyme and pathway databasesReactome REACT_1628; Transcription-coupled NER (TC-NER).
Enzyme and pathway databasesReactome REACT_1655; RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
Enzyme and pathway databasesReactome REACT_1753; mRNA Splicing - Minor Pathway.
Enzyme and pathway databasesReactome REACT_1851; RNA Polymerase II Transcription Initiation.
Enzyme and pathway databasesReactome REACT_1941; Formation of transcription-coupled NER (TC-NER) repair complex.
Enzyme and pathway databasesReactome REACT_2089; RNA Polymerase II Promoter Escape.
Enzyme and pathway databasesReactome REACT_22107; RNA Polymerase II Pre-transcription Events.
Enzyme and pathway databasesReactome REACT_22201; Formation of HIV elongation complex in the absence of HIV Tat.
Enzyme and pathway databasesReactome REACT_2222; Dual incision reaction in TC-NER.
Enzyme and pathway databasesReactome REACT_267668; Transcriptional regulation by small RNAs.
Enzyme and pathway databasesReactome REACT_467; mRNA Splicing - Major Pathway.
Enzyme and pathway databasesReactome REACT_6143; Pausing and recovery of Tat-mediated HIV elongation.
Enzyme and pathway databasesReactome REACT_6162; Tat-mediated elongation of the HIV-1 transcript.
Enzyme and pathway databasesReactome REACT_6233; Transcription of the HIV genome.
Enzyme and pathway databasesReactome REACT_6237; RNA Pol II CTD phosphorylation and interaction with CE.
Enzyme and pathway databasesReactome REACT_6244; Pausing and recovery of HIV elongation.
Enzyme and pathway databasesReactome REACT_6253; RNA Polymerase II HIV Promoter Escape.
Enzyme and pathway databasesReactome REACT_6259; HIV elongation arrest and recovery.
Enzyme and pathway databasesReactome REACT_6261; Abortive elongation of HIV-1 transcript in the absence of Tat.
Enzyme and pathway databasesReactome REACT_6319; Formation of the HIV-1 Early Elongation Complex.
Enzyme and pathway databasesReactome REACT_6332; HIV Transcription Initiation.
Enzyme and pathway databasesReactome REACT_6344; Tat-mediated HIV elongation arrest and recovery.
Enzyme and pathway databasesReactome REACT_6346; Formation of HIV-1 elongation complex containing HIV-1 Tat.
Enzyme and pathway databasesReactome REACT_6354; Viral Messenger RNA Synthesis.
Enzyme and pathway databasesReactome REACT_833; RNA Polymerase II Transcription Elongation.
Enzyme and pathway databasesReactome REACT_834; RNA Polymerase II Transcription Initiation And Promoter Clearance.
Enzyme and pathway databasesReactome REACT_846; Formation of the Early Elongation Complex.
Enzyme and pathway databasesReactome REACT_975; RNA Pol II CTD phosphorylation and interaction with CE.
3D structure databasesPDB 2GHQ; X-ray; 2.05 A; C/D=1795-1803.
3D structure databasesPDB 2GHT; X-ray; 1.80 A; C/D=1796-1803.
3D structure databasesPDB 2LTO; NMR; -; B=1804-1816.
3D structure databasesPDB 3D9K; X-ray; 2.20 A; Y/Z=1790-1803.
3D structure databasesPDB 3D9L; X-ray; 2.20 A; Y/Z=1790-1803.
3D structure databasesPDB 3D9M; X-ray; 1.75 A; Y/Z=1790-1803.
3D structure databasesPDB 3D9N; X-ray; 1.60 A; Y/Z=1790-1803.
3D structure databasesPDB 3D9O; X-ray; 2.00 A; Z=1790-1803.
3D structure databasesPDB 3D9P; X-ray; 2.10 A; Y/Z=1790-1803.
3D structure databasesPDB 4JXT; X-ray; 1.90 A; B=1787-1805.
3D structure databasesPDBsum 2GHQ; -.
3D structure databasesPDBsum 2GHT; -.
3D structure databasesPDBsum 2LTO; -.
3D structure databasesPDBsum 3D9K; -.
3D structure databasesPDBsum 3D9L; -.
3D structure databasesPDBsum 3D9M; -.
3D structure databasesPDBsum 3D9N; -.
3D structure databasesPDBsum 3D9O; -.
3D structure databasesPDBsum 3D9P; -.
3D structure databasesPDBsum 4JXT; -.
3D structure databasesProteinModelPortal P24928; -.
3D structure databasesSMR P24928; 16-896, 1072-1475.
Phylogenomic databaseseggNOG COG0086; -.
Phylogenomic databasesGeneTree ENSGT00730000110946; -.
Phylogenomic databasesHOGENOM HOG000222975; -.
Phylogenomic databasesHOVERGEN HBG004339; -.
Phylogenomic databasesInParanoid P24928; -.
Phylogenomic databasesKO K03006; -.
Phylogenomic databasesOMA IVFNRQP; -.
Phylogenomic databasesOrthoDB EOG7K0ZB8; -.
Phylogenomic databasesPhylomeDB P24928; -.
Phylogenomic databasesTreeFam TF103036; -.
Organism-specific databasesCTD 5430; -.
Organism-specific databasesGeneCards GC17P007387; -.
Organism-specific databasesH-InvDB HIX0173727; -.
Organism-specific databasesHGNC HGNC:9187; POLR2A.
Organism-specific databasesHPA CAB012226; -.
Organism-specific databasesHPA CAB016388; -.
Organism-specific databasesHPA CAB022311; -.
Organism-specific databasesHPA HPA021563; -.
Organism-specific databasesHPA HPA053012; -.
Organism-specific databasesMIM 180660; gene+phenotype.
Organism-specific databasesneXtProt NX_P24928; -.
Organism-specific databasesPharmGKB PA33507; -.
ChemistryBindingDB P24928; -.
ChemistryChEMBL CHEMBL1641353; -.
OtherChiTaRS POLR2A; human.
OtherEvolutionaryTrace P24928; -.
OtherGeneWiki POLR2A; -.
OtherGenomeRNAi 5430; -.
OtherNextBio 21009; -.
OtherPRO PR:P24928; -.



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