Cancer Cell Metabolism Gene Database

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 5431
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000314595; ENSP00000312735; ENSG00000047315.
Genome annotation databasesEnsembl ENST00000381227; ENSP00000370625; ENSG00000047315.
Genome annotation databasesGeneID 5431; -.
Genome annotation databasesKEGG hsa:5431; -.
Genome annotation databasesUCSC uc003hcl.1; human.
Sequence databasesCCDS CCDS3511.1; -.
Sequence databasesEMBL X63563; CAA45124.1; -; mRNA.
Sequence databasesEMBL AK289823; BAF82512.1; -; mRNA.
Sequence databasesEMBL CH471057; EAX05519.1; -; Genomic_DNA.
Sequence databasesEMBL BC023503; AAH23503.2; -; mRNA.
Sequence databasesEMBL AF055028; AAC09367.1; -; mRNA.
Sequence databasesPIR S28976; S28976.
Sequence databasesRefSeq NP_000929.1; NM_000938.1.
Sequence databasesUniGene Hs.602757; -.
Polymorphism databasesDMDM 401012; -.
Gene expression databasesBgee P30876; -.
Gene expression databasesCleanEx HS_POLR2B; -.
Gene expression databasesExpressionAtlas P30876; baseline and differential.
Gene expression databasesGenevestigator P30876; -.
OntologiesGO GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0005654; C:nucleoplasm; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0003682; F:chromatin binding; IEA:Ensembl.
OntologiesGO GO:0003677; F:DNA binding; TAS:ProtInc.
OntologiesGO GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
OntologiesGO GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0032549; F:ribonucleoside binding; IEA:InterPro.
OntologiesGO GO:0006370; P:7-methylguanosine mRNA capping; TAS:Reactome.
OntologiesGO GO:0006281; P:DNA repair; TAS:Reactome.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0000398; P:mRNA splicing, via spliceosome; TAS:Reactome.
OntologiesGO GO:0006289; P:nucleotide-excision repair; TAS:Reactome.
OntologiesGO GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.
OntologiesGO GO:0008380; P:RNA splicing; TAS:Reactome.
OntologiesGO GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.
OntologiesGO GO:0006366; P:transcription from RNA polymerase II promoter; IDA:UniProtKB.
OntologiesGO GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.
OntologiesGO GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.
OntologiesGO GO:0016032; P:viral process; TAS:Reactome.
Proteomic databasesMaxQB P30876; -.
Proteomic databasesPaxDb P30876; -.
Proteomic databasesPeptideAtlas P30876; -.
Proteomic databasesPRIDE P30876; -.
Family and domain databasesGene3D 2.40.270.10; -; 2.
Family and domain databasesGene3D 2.40.50.150; -; 1.
Family and domain databasesGene3D 3.90.1110.10; -; 1.
Family and domain databasesInterPro IPR015712; DNA-dir_RNA_pol_su2.
Family and domain databasesInterPro IPR007120; DNA-dir_RNA_pol_su2_6.
Family and domain databasesInterPro IPR007121; RNA_pol_bsu_CS.
Family and domain databasesInterPro IPR007644; RNA_pol_bsu_protrusion.
Family and domain databasesInterPro IPR007642; RNA_pol_Rpb2_2.
Family and domain databasesInterPro IPR007645; RNA_pol_Rpb2_3.
Family and domain databasesInterPro IPR007646; RNA_pol_Rpb2_4.
Family and domain databasesInterPro IPR007647; RNA_pol_Rpb2_5.
Family and domain databasesInterPro IPR007641; RNA_pol_Rpb2_7.
Family and domain databasesInterPro IPR014724; RNA_pol_RPB2_OB-fold.
Family and domain databasesPANTHER PTHR20856; PTHR20856; 1.
Family and domain databasesPfam PF04563; RNA_pol_Rpb2_1; 1.
Family and domain databasesPfam PF04561; RNA_pol_Rpb2_2; 1.
Family and domain databasesPfam PF04565; RNA_pol_Rpb2_3; 1.
Family and domain databasesPfam PF04566; RNA_pol_Rpb2_4; 1.
Family and domain databasesPfam PF04567; RNA_pol_Rpb2_5; 1.
Family and domain databasesPfam PF00562; RNA_pol_Rpb2_6; 1.
Family and domain databasesPfam PF04560; RNA_pol_Rpb2_7; 1.
Family and domain databasesPROSITE PS01166; RNA_POL_BETA; 1.
PTM databasesPhosphoSite P30876; -.
Protein-protein interaction databasesBioGrid 111427; 78.
Protein-protein interaction databasesDIP DIP-32910N; -.
Protein-protein interaction databasesIntAct P30876; 15.
Protein-protein interaction databasesMINT MINT-1216897; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000312735; -.
Enzyme and pathway databasesReactome REACT_12417; MicroRNA (miRNA) biogenesis.
Enzyme and pathway databasesReactome REACT_125; Processing of Capped Intron-Containing Pre-mRNA.
Enzyme and pathway databasesReactome REACT_1470; mRNA Capping.
Enzyme and pathway databasesReactome REACT_1628; Transcription-coupled NER (TC-NER).
Enzyme and pathway databasesReactome REACT_1655; RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
Enzyme and pathway databasesReactome REACT_1753; mRNA Splicing - Minor Pathway.
Enzyme and pathway databasesReactome REACT_1851; RNA Polymerase II Transcription Initiation.
Enzyme and pathway databasesReactome REACT_1941; Formation of transcription-coupled NER (TC-NER) repair complex.
Enzyme and pathway databasesReactome REACT_2089; RNA Polymerase II Promoter Escape.
Enzyme and pathway databasesReactome REACT_22107; RNA Polymerase II Pre-transcription Events.
Enzyme and pathway databasesReactome REACT_22201; Formation of HIV elongation complex in the absence of HIV Tat.
Enzyme and pathway databasesReactome REACT_2222; Dual incision reaction in TC-NER.
Enzyme and pathway databasesReactome REACT_267668; Transcriptional regulation by small RNAs.
Enzyme and pathway databasesReactome REACT_467; mRNA Splicing - Major Pathway.
Enzyme and pathway databasesReactome REACT_6143; Pausing and recovery of Tat-mediated HIV elongation.
Enzyme and pathway databasesReactome REACT_6162; Tat-mediated elongation of the HIV-1 transcript.
Enzyme and pathway databasesReactome REACT_6233; Transcription of the HIV genome.
Enzyme and pathway databasesReactome REACT_6237; RNA Pol II CTD phosphorylation and interaction with CE.
Enzyme and pathway databasesReactome REACT_6244; Pausing and recovery of HIV elongation.
Enzyme and pathway databasesReactome REACT_6253; RNA Polymerase II HIV Promoter Escape.
Enzyme and pathway databasesReactome REACT_6259; HIV elongation arrest and recovery.
Enzyme and pathway databasesReactome REACT_6261; Abortive elongation of HIV-1 transcript in the absence of Tat.
Enzyme and pathway databasesReactome REACT_6319; Formation of the HIV-1 Early Elongation Complex.
Enzyme and pathway databasesReactome REACT_6332; HIV Transcription Initiation.
Enzyme and pathway databasesReactome REACT_6344; Tat-mediated HIV elongation arrest and recovery.
Enzyme and pathway databasesReactome REACT_6346; Formation of HIV-1 elongation complex containing HIV-1 Tat.
Enzyme and pathway databasesReactome REACT_6354; Viral Messenger RNA Synthesis.
Enzyme and pathway databasesReactome REACT_833; RNA Polymerase II Transcription Elongation.
Enzyme and pathway databasesReactome REACT_834; RNA Polymerase II Transcription Initiation And Promoter Clearance.
Enzyme and pathway databasesReactome REACT_846; Formation of the Early Elongation Complex.
Enzyme and pathway databasesReactome REACT_975; RNA Pol II CTD phosphorylation and interaction with CE.
3D structure databasesProteinModelPortal P30876; -.
3D structure databasesSMR P30876; 917-1112.
Phylogenomic databaseseggNOG COG0085; -.
Phylogenomic databasesGeneTree ENSGT00760000119346; -.
Phylogenomic databasesHOGENOM HOG000222962; -.
Phylogenomic databasesHOVERGEN HBG017744; -.
Phylogenomic databasesInParanoid P30876; -.
Phylogenomic databasesKO K03010; -.
Phylogenomic databasesOMA DSQMLEM; -.
Phylogenomic databasesOrthoDB EOG7JT6VC; -.
Phylogenomic databasesPhylomeDB P30876; -.
Phylogenomic databasesTreeFam TF103037; -.
Organism-specific databasesCTD 5431; -.
Organism-specific databasesGeneCards GC04P057844; -.
Organism-specific databasesHGNC HGNC:9188; POLR2B.
Organism-specific databasesHPA HPA037506; -.
Organism-specific databasesMIM 180661; gene.
Organism-specific databasesneXtProt NX_P30876; -.
Organism-specific databasesPharmGKB PA33508; -.
OtherChiTaRS POLR2B; human.
OtherGeneWiki POLR2B; -.
OtherGenomeRNAi 5431; -.
OtherNextBio 21013; -.
OtherPRO PR:P30876; -.



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