Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 6188
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000278572; ENSP00000278572; ENSG00000149273. [P23396-2]
Genome annotation databasesEnsembl ENST00000524851; ENSP00000433821; ENSG00000149273. [P23396-1]
Genome annotation databasesEnsembl ENST00000527446; ENSP00000436971; ENSG00000149273. [P23396-1]
Genome annotation databasesEnsembl ENST00000531188; ENSP00000434643; ENSG00000149273. [P23396-1]
Genome annotation databasesGeneID 6188; -.
Genome annotation databasesKEGG hsa:6188; -.
Genome annotation databasesUCSC uc001owh.4; human. [P23396-1]
Sequence databasesCCDS CCDS58161.1; -. [P23396-2]
Sequence databasesCCDS CCDS8236.1; -. [P23396-1]
Sequence databasesEMBL U14990; AAB60336.1; -; mRNA.
Sequence databasesEMBL U14991; AAB60337.1; -; mRNA.
Sequence databasesEMBL U14992; AAB60338.1; -; mRNA.
Sequence databasesEMBL X55715; CAA39248.1; -; mRNA.
Sequence databasesEMBL S42658; AAB19349.2; -; mRNA.
Sequence databasesEMBL AB061838; BAB79476.1; -; Genomic_DNA.
Sequence databasesEMBL AY791291; AAV40835.1; -; Genomic_DNA.
Sequence databasesEMBL AK313051; BAG35882.1; -; mRNA.
Sequence databasesEMBL AP000744; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL CH471076; EAW74963.1; -; Genomic_DNA.
Sequence databasesEMBL BC003137; AAH03137.1; -; mRNA.
Sequence databasesEMBL BC003577; AAH03577.1; -; mRNA.
Sequence databasesEMBL BC013196; AAH13196.1; -; mRNA.
Sequence databasesEMBL BC034149; AAH34149.1; -; mRNA.
Sequence databasesEMBL BC071917; AAH71917.1; -; mRNA.
Sequence databasesEMBL BC100284; AAI00285.1; -; mRNA.
Sequence databasesEMBL L16016; AAA18095.1; -; Genomic_DNA.
Sequence databasesEMBL AB062288; BAB93471.1; ALT_INIT; mRNA.
Sequence databasesPIR A41247; R3HUS3.
Sequence databasesRefSeq NP_000996.2; NM_001005.4. [P23396-1]
Sequence databasesRefSeq NP_001243731.1; NM_001256802.1. [P23396-1]
Sequence databasesRefSeq NP_001247435.1; NM_001260506.1. [P23396-2]
Sequence databasesRefSeq NP_001247436.1; NM_001260507.1.
Sequence databasesUniGene Hs.546286; -.
Sequence databasesUniGene Hs.740358; -.
Polymorphism databasesDMDM 417719; -.
Gene expression databasesBgee P23396; -.
Gene expression databasesCleanEx HS_RPS3; -.
Gene expression databasesExpressionAtlas P23396; baseline and differential.
Gene expression databasesGenevestigator P23396; -.
OntologiesGO GO:0005737; C:cytoplasm; IDA:UniProtKB.
OntologiesGO GO:0005829; C:cytosol; IDA:UniProtKB.
OntologiesGO GO:0022627; C:cytosolic small ribosomal subunit; IDA:UniProtKB.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProt.
OntologiesGO GO:0005925; C:focal adhesion; IDA:UniProtKB.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
OntologiesGO GO:0032587; C:ruffle membrane; IDA:UniProtKB.
OntologiesGO GO:0003684; F:damaged DNA binding; IDA:UniProtKB.
OntologiesGO GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; IDA:UniProtKB.
OntologiesGO GO:0019899; F:enzyme binding; IPI:UniProtKB.
OntologiesGO GO:0051536; F:iron-sulfur cluster binding; NAS:UniProtKB.
OntologiesGO GO:0003729; F:mRNA binding; IDA:UniProtKB.
OntologiesGO GO:0051059; F:NF-kappaB binding; IPI:UniProtKB.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0051018; F:protein kinase A binding; IPI:UniProtKB.
OntologiesGO GO:0019901; F:protein kinase binding; IPI:UniProtKB.
OntologiesGO GO:0003735; F:structural constituent of ribosome; IDA:UniProtKB.
OntologiesGO GO:0044267; P:cellular protein metabolic process; TAS:Reactome.
OntologiesGO GO:0006974; P:cellular response to DNA damage stimulus; IEP:UniProtKB.
OntologiesGO GO:0002181; P:cytoplasmic translation; IBA:RefGenome.
OntologiesGO GO:0000737; P:DNA catabolic process, endonucleolytic; IDA:GOC.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0045738; P:negative regulation of DNA repair; IMP:UniProtKB.
OntologiesGO GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.
OntologiesGO GO:2001235; P:positive regulation of apoptotic signaling pathway; IDA:UniProtKB.
OntologiesGO GO:1902546; P:positive regulation of DNA N-glycosylase activity; IDA:UniProtKB.
OntologiesGO GO:0051092; P:positive regulation of NF-kappaB transcription factor activity; IMP:UniProtKB.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; TAS:Reactome.
OntologiesGO GO:0006412; P:translation; NAS:UniProtKB.
OntologiesGO GO:0006414; P:translational elongation; TAS:Reactome.
OntologiesGO GO:0006413; P:translational initiation; NAS:UniProtKB.
OntologiesGO GO:0006415; P:translational termination; TAS:Reactome.
OntologiesGO GO:0019058; P:viral life cycle; TAS:Reactome.
OntologiesGO GO:0016032; P:viral process; TAS:Reactome.
OntologiesGO GO:0019083; P:viral transcription; TAS:Reactome.
Proteomic databasesMaxQB P23396; -.
Proteomic databasesPaxDb P23396; -.
Proteomic databasesPeptideAtlas P23396; -.
Proteomic databasesPRIDE P23396; -.
Family and domain databasesGene3D 3.30.1140.32; -; 1.
Family and domain databasesGene3D 3.30.300.20; -; 1.
Family and domain databasesInterPro IPR004087; KH_dom.
Family and domain databasesInterPro IPR015946; KH_dom-like_a/b.
Family and domain databasesInterPro IPR004044; KH_dom_type_2.
Family and domain databasesInterPro IPR009019; KH_prok-type.
Family and domain databasesInterPro IPR001351; Ribosomal_S3_C.
Family and domain databasesInterPro IPR018280; Ribosomal_S3_CS.
Family and domain databasesInterPro IPR005703; Ribosomal_S3_euk/arc.
Family and domain databasesPfam PF07650; KH_2; 1.
Family and domain databasesPfam PF00189; Ribosomal_S3_C; 1.
Family and domain databasesPROSITE PS50823; KH_TYPE_2; 1.
Family and domain databasesPROSITE PS00548; RIBOSOMAL_S3; 1.
Family and domain databasesSMART SM00322; KH; 1.
Family and domain databasesSUPFAM SSF54814; SSF54814; 1.
Family and domain databasesSUPFAM SSF54821; SSF54821; 1.
Family and domain databasesTIGRFAMs TIGR01008; rpsC_E_A; 1.
PTM databasesPhosphoSite P23396; -.
Protein-protein interaction databasesBioGrid 112102; 191.
Protein-protein interaction databasesIntAct P23396; 44.
Protein-protein interaction databasesMINT MINT-4999144; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000278572; -.
Enzyme and pathway databasesReactome REACT_1079; Formation of the ternary complex, and subsequently, the 43S complex.
Enzyme and pathway databasesReactome REACT_115902; SRP-dependent cotranslational protein targeting to membrane.
Enzyme and pathway databasesReactome REACT_1404; Peptide chain elongation.
Enzyme and pathway databasesReactome REACT_1797; Formation of a pool of free 40S subunits.
Enzyme and pathway databasesReactome REACT_1979; Translation initiation complex formation.
Enzyme and pathway databasesReactome REACT_1986; Eukaryotic Translation Termination.
Enzyme and pathway databasesReactome REACT_2085; GTP hydrolysis and joining of the 60S ribosomal subunit.
Enzyme and pathway databasesReactome REACT_75768; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
Enzyme and pathway databasesReactome REACT_75822; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
Enzyme and pathway databasesReactome REACT_79; L13a-mediated translational silencing of Ceruloplasmin expression.
Enzyme and pathway databasesReactome REACT_931; Ribosomal scanning and start codon recognition.
Enzyme and pathway databasesReactome REACT_9491; Viral mRNA Translation.
3D structure databasesPDB 1WH9; NMR; -; A=17-95.
3D structure databasesPDB 3J3A; EM; 5.00 A; D=1-243.
3D structure databasesPDBsum 1WH9; -.
3D structure databasesPDBsum 3J3A; -.
3D structure databasesProteinModelPortal P23396; -.
3D structure databasesSMR P23396; 1-227.
Protocols and materials databasesDNASU 6188; -.
Phylogenomic databaseseggNOG COG0092; -.
Phylogenomic databasesGeneTree ENSGT00390000008610; -.
Phylogenomic databasesHOGENOM HOG000210611; -.
Phylogenomic databasesHOVERGEN HBG002195; -.
Phylogenomic databasesInParanoid P23396; -.
Phylogenomic databasesKO K02985; -.
Phylogenomic databasesOMA VDYPEMI; -.
Phylogenomic databasesOrthoDB EOG7F7W9M; -.
Phylogenomic databasesPhylomeDB P23396; -.
Phylogenomic databasesTreeFam TF300901; -.
Organism-specific databasesCTD 6188; -.
Organism-specific databasesGeneCards GC11P075110; -.
Organism-specific databasesHGNC HGNC:10420; RPS3.
Organism-specific databasesMIM 600454; gene.
Organism-specific databasesneXtProt NX_P23396; -.
Organism-specific databasesPharmGKB PA34829; -.
OtherChiTaRS RPS3; human.
OtherEvolutionaryTrace P23396; -.
OtherGeneWiki RPS3; -.
OtherGenomeRNAi 6188; -.
OtherNextBio 24029; -.
OtherPRO PR:P23396; -.



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