Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 6385
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000372733; ENSP00000361818; ENSG00000124145. [P31431-1]
Genome annotation databasesGeneID 6385; -.
Genome annotation databasesKEGG hsa:6385; -.
Genome annotation databasesUCSC uc002xnu.3; human. [P31431-1]
Sequence databasesCCDS CCDS13350.1; -. [P31431-1]
Sequence databasesEMBL X67016; CAA47406.1; -; mRNA.
Sequence databasesEMBL D13292; BAA02550.1; -; mRNA.
Sequence databasesEMBL D79206; BAA19613.1; -; Genomic_DNA.
Sequence databasesEMBL AK312507; BAG35408.1; -; mRNA.
Sequence databasesEMBL CR542045; CAG46842.1; -; mRNA.
Sequence databasesEMBL CR542074; CAG46871.1; -; mRNA.
Sequence databasesEMBL AK222695; BAD96415.1; -; mRNA.
Sequence databasesEMBL AK223243; BAD96963.1; -; mRNA.
Sequence databasesEMBL AL021578; CAA16520.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW75861.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW75862.1; -; Genomic_DNA.
Sequence databasesEMBL BC030805; AAH30805.1; -; mRNA.
Sequence databasesEMBL AA151028; -; NOT_ANNOTATED_CDS; mRNA.
Sequence databasesEMBL AA258502; -; NOT_ANNOTATED_CDS; mRNA.
Sequence databasesPIR JC1457; JC1457.
Sequence databasesRefSeq NP_002990.2; NM_002999.3. [P31431-1]
Sequence databasesUniGene Hs.632267; -.
Polymorphism databasesDMDM 2851418; -.
Gene expression databasesBgee P31431; -.
Gene expression databasesCleanEx HS_SDC4; -.
Gene expression databasesExpressionAtlas P31431; baseline and differential.
Gene expression databasesGenevestigator P31431; -.
OntologiesGO GO:0009986; C:cell surface; IEA:Ensembl.
OntologiesGO GO:0043034; C:costamere; IEA:Ensembl.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProt.
OntologiesGO GO:0005925; C:focal adhesion; IEA:Ensembl.
OntologiesGO GO:0005796; C:Golgi lumen; TAS:Reactome.
OntologiesGO GO:0005887; C:integral component of plasma membrane; NAS:UniProtKB.
OntologiesGO GO:0043202; C:lysosomal lumen; TAS:Reactome.
OntologiesGO GO:0045121; C:membrane raft; IEA:Ensembl.
OntologiesGO GO:0005886; C:plasma membrane; TAS:Reactome.
OntologiesGO GO:0070053; F:thrombospondin receptor activity; IMP:BHF-UCL.
OntologiesGO GO:0005975; P:carbohydrate metabolic process; TAS:Reactome.
OntologiesGO GO:0030204; P:chondroitin sulfate metabolic process; TAS:Reactome.
OntologiesGO GO:0030198; P:extracellular matrix organization; TAS:Reactome.
OntologiesGO GO:0006024; P:glycosaminoglycan biosynthetic process; TAS:Reactome.
OntologiesGO GO:0006027; P:glycosaminoglycan catabolic process; TAS:Reactome.
OntologiesGO GO:0030203; P:glycosaminoglycan metabolic process; TAS:Reactome.
OntologiesGO GO:0007603; P:phototransduction, visible light; TAS:Reactome.
OntologiesGO GO:0051894; P:positive regulation of focal adhesion assembly; IEA:Ensembl.
OntologiesGO GO:0045860; P:positive regulation of protein kinase activity; IEA:Ensembl.
OntologiesGO GO:0051496; P:positive regulation of stress fiber assembly; IEA:Ensembl.
OntologiesGO GO:0001523; P:retinoid metabolic process; TAS:Reactome.
OntologiesGO GO:0044281; P:small molecule metabolic process; TAS:Reactome.
OntologiesGO GO:0001657; P:ureteric bud development; IEA:Ensembl.
Proteomic databasesMaxQB P31431; -.
Proteomic databasesPaxDb P31431; -.
Proteomic databasesPRIDE P31431; -.
Protein family/group databasesTCDB 9.A.35.1.1; the peptide translocating syndecan (syndecan) family.
Family and domain databasesInterPro IPR003585; Neurexin-like.
Family and domain databasesInterPro IPR001050; Syndecan.
Family and domain databasesInterPro IPR027789; Syndecan/Neurexin_dom.
Family and domain databasesPANTHER PTHR10915; PTHR10915; 1.
Family and domain databasesPfam PF01034; Syndecan; 1.
Family and domain databasesPROSITE PS00964; SYNDECAN; 1.
Family and domain databasesSMART SM00294; 4.1m; 1.
PTM databasesPhosphoSite P31431; -.
Protein-protein interaction databasesBioGrid 112286; 10.
Protein-protein interaction databasesDIP DIP-29945N; -.
Protein-protein interaction databasesIntAct P31431; 3.
Protein-protein interaction databasesMINT MINT-140673; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000361818; -.
Enzyme and pathway databasesReactome REACT_120752; HS-GAG degradation.
Enzyme and pathway databasesReactome REACT_121248; HS-GAG biosynthesis.
Enzyme and pathway databasesReactome REACT_121408; A tetrasaccharide linker sequence is required for GAG synthesis.
Enzyme and pathway databasesReactome REACT_163942; Syndecan interactions.
Enzyme and pathway databasesReactome REACT_24968; Retinoid metabolism and transport.
Enzyme and pathway databasesReactome REACT_267654; Defective EXT2 causes exostoses 2.
Enzyme and pathway databasesReactome REACT_267659; Defective B3GAT3 causes JDSSDHD.
Enzyme and pathway databasesReactome REACT_267674; Defective EXT1 causes exostoses 1, TRPS2 and CHDS.
Enzyme and pathway databasesReactome REACT_267711; Defective B4GALT7 causes EDS, progeroid type.
3D structure databasesPDB 1EJP; NMR; -; A/B=171-198.
3D structure databasesPDB 1EJQ; NMR; -; A/B=171-198.
3D structure databasesPDB 1OBY; X-ray; 1.85 A; P/Q=193-198.
3D structure databasesPDB 1YBO; X-ray; 2.30 A; C/D=182-198.
3D structure databasesPDBsum 1EJP; -.
3D structure databasesPDBsum 1EJQ; -.
3D structure databasesPDBsum 1OBY; -.
3D structure databasesPDBsum 1YBO; -.
3D structure databasesProteinModelPortal P31431; -.
3D structure databasesSMR P31431; 171-198.
Protocols and materials databasesDNASU 6385; -.
Phylogenomic databaseseggNOG NOG83582; -.
Phylogenomic databasesGeneTree ENSGT00530000063116; -.
Phylogenomic databasesHOGENOM HOG000263414; -.
Phylogenomic databasesHOVERGEN HBG004501; -.
Phylogenomic databasesInParanoid P31431; -.
Phylogenomic databasesKO K16338; -.
Phylogenomic databasesOMA IPKRISP; -.
Phylogenomic databasesOrthoDB EOG7RV9HS; -.
Phylogenomic databasesPhylomeDB P31431; -.
Phylogenomic databasesTreeFam TF320463; -.
Organism-specific databasesCTD 6385; -.
Organism-specific databasesGeneCards GC20M043953; -.
Organism-specific databasesHGNC HGNC:10661; SDC4.
Organism-specific databasesHPA CAB013240; -.
Organism-specific databasesHPA HPA005716; -.
Organism-specific databasesMIM 600017; gene.
Organism-specific databasesneXtProt NX_P31431; -.
Organism-specific databasesPharmGKB PA35591; -.
OtherChiTaRS SDC4; human.
OtherEvolutionaryTrace P31431; -.
OtherGeneWiki SDC4; -.
OtherGenomeRNAi 6385; -.
OtherNextBio 24792; -.
OtherPMAP-CutDB P31431; -.
OtherPRO PR:P31431; -.



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