Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 6470
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000316694; ENSP00000318868; ENSG00000176974. [P34896-1]
Genome annotation databasesEnsembl ENST00000352886; ENSP00000345881; ENSG00000176974. [P34896-4]
Genome annotation databasesEnsembl ENST00000354098; ENSP00000318805; ENSG00000176974. [P34896-2]
Genome annotation databasesGeneID 6470; -.
Genome annotation databasesKEGG hsa:6470; -.
Genome annotation databasesUCSC uc002gsz.3; human. [P34896-1]
Genome annotation databasesUCSC uc002gtb.3; human. [P34896-2]
Sequence databasesCCDS CCDS11196.1; -. [P34896-1]
Sequence databasesCCDS CCDS11197.1; -. [P34896-2]
Sequence databasesCCDS CCDS62112.1; -. [P34896-4]
Sequence databasesEMBL L11931; AAA63257.1; -; mRNA.
Sequence databasesEMBL L23928; AAA36020.1; -; mRNA.
Sequence databasesEMBL L23928; AAA36019.1; -; mRNA.
Sequence databasesEMBL L23928; AAA36018.1; -; mRNA.
Sequence databasesEMBL Y14485; CAB54838.1; -; mRNA.
Sequence databasesEMBL Y14486; CAB54839.1; -; mRNA.
Sequence databasesEMBL Y14487; CAB54840.1; -; mRNA.
Sequence databasesEMBL AK298415; BAG60641.1; -; mRNA.
Sequence databasesEMBL AC127537; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL AL353997; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL CH471196; EAW55637.1; -; Genomic_DNA.
Sequence databasesEMBL CH471196; EAW55640.1; -; Genomic_DNA.
Sequence databasesEMBL CH471196; EAW55641.1; -; Genomic_DNA.
Sequence databasesEMBL BC007979; AAH07979.1; -; mRNA.
Sequence databasesEMBL BC022874; AAH22874.1; -; mRNA.
Sequence databasesEMBL BC038598; AAH38598.1; -; mRNA.
Sequence databasesPIR A46746; A46746.
Sequence databasesRefSeq NP_001268715.1; NM_001281786.1. [P34896-4]
Sequence databasesRefSeq NP_004160.3; NM_004169.4. [P34896-1]
Sequence databasesRefSeq NP_683718.1; NM_148918.2. [P34896-2]
Sequence databasesRefSeq XP_005256824.1; XM_005256767.1. [P34896-1]
Sequence databasesUniGene Hs.513987; -.
Sequence databasesUniGene Hs.592944; -.
Sequence databasesUniGene Hs.636044; -.
Polymorphism databasesDMDM 462184; -.
Gene expression databasesBgee P34896; -.
Gene expression databasesCleanEx HS_SHMT1; -.
Gene expression databasesExpressionAtlas P34896; baseline and differential.
Gene expression databasesGenevestigator P34896; -.
OntologiesGO GO:0005737; C:cytoplasm; IDA:HPA.
OntologiesGO GO:0005829; C:cytosol; IDA:UniProtKB.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
OntologiesGO GO:0005739; C:mitochondrion; IEA:Ensembl.
OntologiesGO GO:0005634; C:nucleus; IDA:HPA.
OntologiesGO GO:0016597; F:amino acid binding; IEA:Ensembl.
OntologiesGO GO:0004372; F:glycine hydroxymethyltransferase activity; IDA:UniProtKB.
OntologiesGO GO:0008732; F:L-allo-threonine aldolase activity; IEA:Ensembl.
OntologiesGO GO:0042803; F:protein homodimerization activity; IDA:UniProtKB.
OntologiesGO GO:0030170; F:pyridoxal phosphate binding; IDA:UniProtKB.
OntologiesGO GO:0045329; P:carnitine biosynthetic process; TAS:Reactome.
OntologiesGO GO:0034641; P:cellular nitrogen compound metabolic process; TAS:Reactome.
OntologiesGO GO:0046655; P:folic acid metabolic process; IDA:UniProtKB.
OntologiesGO GO:0019264; P:glycine biosynthetic process from serine; IEA:Ensembl.
OntologiesGO GO:0006565; P:L-serine catabolic process; IDA:UniProtKB.
OntologiesGO GO:0051289; P:protein homotetramerization; IEA:Ensembl.
OntologiesGO GO:0051262; P:protein tetramerization; IDA:UniProtKB.
OntologiesGO GO:0009113; P:purine nucleobase biosynthetic process; IDA:UniProtKB.
OntologiesGO GO:0044281; P:small molecule metabolic process; TAS:Reactome.
OntologiesGO GO:0035999; P:tetrahydrofolate interconversion; IEA:UniProtKB-UniPathway.
OntologiesGO GO:0006766; P:vitamin metabolic process; TAS:Reactome.
OntologiesGO GO:0006767; P:water-soluble vitamin metabolic process; TAS:Reactome.
Proteomic databasesMaxQB P34896; -.
Proteomic databasesPaxDb P34896; -.
Proteomic databasesPRIDE P34896; -.
Family and domain databasesGene3D 3.40.640.10; -; 1.
Family and domain databasesGene3D 3.90.1150.10; -; 1.
Family and domain databasesHAMAP MF_00051; SHMT; 1.
Family and domain databasesInterPro IPR015424; PyrdxlP-dep_Trfase.
Family and domain databasesInterPro IPR015421; PyrdxlP-dep_Trfase_major_sub1.
Family and domain databasesInterPro IPR015422; PyrdxlP-dep_Trfase_major_sub2.
Family and domain databasesInterPro IPR001085; Ser_HO-MeTrfase.
Family and domain databasesInterPro IPR019798; Ser_HO-MeTrfase_PLP_BS.
Family and domain databasesPANTHER PTHR11680; PTHR11680; 1.
Family and domain databasesPfam PF00464; SHMT; 1.
Family and domain databasesPIRSF PIRSF000412; SHMT; 1.
Family and domain databasesPROSITE PS00096; SHMT; 1.
Family and domain databasesSUPFAM SSF53383; SSF53383; 1.
PTM databasesPhosphoSite P34896; -.
Protein-protein interaction databasesBioGrid 112366; 34.
Protein-protein interaction databasesIntAct P34896; 5.
Protein-protein interaction databasesSTRING 9606.ENSP00000318868; -.
Enzyme and pathway databasesBioCyc MetaCyc:HS11114-MONOMER; -.
Enzyme and pathway databasesReactome REACT_11167; Metabolism of folate and pterines.
Enzyme and pathway databasesReactome REACT_2125; Carnitine synthesis.
Enzyme and pathway databasesUniPathway UPA00193; -.
3D structure databasesPDB 1BJ4; X-ray; 2.65 A; A=11-480.
3D structure databasesPDBsum 1BJ4; -.
3D structure databasesProteinModelPortal P34896; -.
3D structure databasesSMR P34896; 11-480.
Protocols and materials databasesDNASU 6470; -.
Phylogenomic databaseseggNOG COG0112; -.
Phylogenomic databasesGeneTree ENSGT00390000002762; -.
Phylogenomic databasesHOGENOM HOG000239405; -.
Phylogenomic databasesHOVERGEN HBG002807; -.
Phylogenomic databasesInParanoid P34896; -.
Phylogenomic databasesKO K00600; -.
Phylogenomic databasesOMA QAMTLEF; -.
Phylogenomic databasesOrthoDB EOG7327NN; -.
Phylogenomic databasesPhylomeDB P34896; -.
Phylogenomic databasesTreeFam TF314667; -.
Organism-specific databasesCTD 6470; -.
Organism-specific databasesGeneCards GC17M018231; -.
Organism-specific databasesHGNC HGNC:10850; SHMT1.
Organism-specific databasesHPA HPA023314; -.
Organism-specific databasesMIM 182144; gene.
Organism-specific databasesneXtProt NX_P34896; -.
Organism-specific databasesPharmGKB PA35753; -.
ChemistryBindingDB P34896; -.
ChemistryChEMBL CHEMBL1772927; -.
ChemistryDrugBank DB00145; Glycine.
ChemistryDrugBank DB01055; Mimosine.
ChemistryDrugBank DB00116; Tetrahydrofolic acid.
OtherChiTaRS SHMT1; human.
OtherEvolutionaryTrace P34896; -.
OtherGenomeRNAi 6470; -.
OtherNextBio 25133; -.
OtherPRO PR:P34896; -.



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