Cancer Cell Metabolism Gene Database

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 65109
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000276201; ENSP00000276201; ENSG00000125351. [Q9BZI7-1]
Genome annotation databasesEnsembl ENST00000345865; ENSP00000245418; ENSG00000125351. [Q9BZI7-2]
Genome annotation databasesGeneID 65109; -.
Genome annotation databasesKEGG hsa:65109; -.
Genome annotation databasesUCSC uc004erz.2; human. [Q9BZI7-1]
Genome annotation databasesUCSC uc004esa.2; human. [Q9BZI7-2]
Sequence databasesCCDS CCDS14587.1; -. [Q9BZI7-2]
Sequence databasesCCDS CCDS14588.1; -. [Q9BZI7-1]
Sequence databasesEMBL AY013251; AAG48511.1; -; mRNA.
Sequence databasesEMBL AF318576; AAG60691.1; -; mRNA.
Sequence databasesEMBL CH471161; EAW89842.1; -; Genomic_DNA.
Sequence databasesEMBL CH471161; EAW89844.1; -; Genomic_DNA.
Sequence databasesEMBL CH471161; EAW89845.1; -; Genomic_DNA.
Sequence databasesEMBL CH471161; EAW89846.1; -; Genomic_DNA.
Sequence databasesEMBL BC121017; AAI21018.1; -; mRNA.
Sequence databasesRefSeq NP_075386.1; NM_023010.3. [Q9BZI7-2]
Sequence databasesRefSeq NP_542199.1; NM_080632.2. [Q9BZI7-1]
Sequence databasesUniGene Hs.103832; -.
Polymorphism databasesDMDM 60390643; -.
Gene expression databasesBgee Q9BZI7; -.
Gene expression databasesCleanEx HS_UPF3B; -.
Gene expression databasesExpressionAtlas Q9BZI7; baseline and differential.
Gene expression databasesGenevestigator Q9BZI7; -.
OntologiesGO GO:0005737; C:cytoplasm; NAS:UniProtKB.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0035145; C:exon-exon junction complex; IDA:UniProtKB.
OntologiesGO GO:0005654; C:nucleoplasm; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; NAS:UniProtKB.
OntologiesGO GO:0003729; F:mRNA binding; IDA:UniProtKB.
OntologiesGO GO:0005487; F:nucleocytoplasmic transporter activity; NAS:UniProtKB.
OntologiesGO GO:0000166; F:nucleotide binding; IEA:InterPro.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.
OntologiesGO GO:0006406; P:mRNA export from nucleus; TAS:Reactome.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0000398; P:mRNA splicing, via spliceosome; TAS:Reactome.
OntologiesGO GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:UniProtKB.
OntologiesGO GO:0045727; P:positive regulation of translation; IDA:UniProtKB.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0008380; P:RNA splicing; TAS:Reactome.
OntologiesGO GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
OntologiesGO GO:0006366; P:transcription from RNA polymerase II promoter; TAS:Reactome.
Proteomic databasesMaxQB Q9BZI7; -.
Proteomic databasesPaxDb Q9BZI7; -.
Proteomic databasesPRIDE Q9BZI7; -.
Family and domain databasesGene3D 3.30.70.330; -; 1.
Family and domain databasesInterPro IPR005120; Nonsense_mediated_decay_UPF3.
Family and domain databasesInterPro IPR012677; Nucleotide-bd_a/b_plait.
Family and domain databasesPfam PF03467; Smg4_UPF3; 1.
PTM databasesPhosphoSite Q9BZI7; -.
Protein-protein interaction databasesBioGrid 122396; 29.
Protein-protein interaction databasesDIP DIP-31143N; -.
Protein-protein interaction databasesIntAct Q9BZI7; 19.
Protein-protein interaction databasesMINT MINT-265168; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000276201; -.
Enzyme and pathway databasesReactome REACT_1597; Transport of Mature mRNA derived from an Intron-Containing Transcript.
Enzyme and pathway databasesReactome REACT_1849; mRNA 3'-end processing.
Enzyme and pathway databasesReactome REACT_467; mRNA Splicing - Major Pathway.
Enzyme and pathway databasesReactome REACT_75822; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
3D structure databasesPDB 1UW4; X-ray; 1.95 A; A/C=50-140.
3D structure databasesPDB 2XB2; X-ray; 3.40 A; G/U=424-483.
3D structure databasesPDBsum 1UW4; -.
3D structure databasesPDBsum 2XB2; -.
3D structure databasesProteinModelPortal Q9BZI7; -.
3D structure databasesSMR Q9BZI7; 50-140.
Phylogenomic databaseseggNOG NOG251520; -.
Phylogenomic databasesGeneTree ENSGT00390000017146; -.
Phylogenomic databasesHOGENOM HOG000230909; -.
Phylogenomic databasesHOVERGEN HBG059714; -.
Phylogenomic databasesInParanoid Q9BZI7; -.
Phylogenomic databasesKO K14328; -.
Phylogenomic databasesOMA YFEFFAN; -.
Phylogenomic databasesOrthoDB EOG7M6D9K; -.
Phylogenomic databasesPhylomeDB Q9BZI7; -.
Phylogenomic databasesTreeFam TF316034; -.
Organism-specific databasesCTD 65109; -.
Organism-specific databasesGeneCards GC0XM118967; -.
Organism-specific databasesHGNC HGNC:20439; UPF3B.
Organism-specific databasesHPA HPA001800; -.
Organism-specific databasesHPA HPA001882; -.
Organism-specific databasesMIM 300298; gene.
Organism-specific databasesMIM 300676; phenotype.
Organism-specific databasesneXtProt NX_Q9BZI7; -.
Organism-specific databasesOrphanet 323; FG syndrome.
Organism-specific databasesOrphanet 776; X-linked intellectual disability with marfanoid habitus.
Organism-specific databasesOrphanet 777; X-linked non-syndromic intellectual disability.
Organism-specific databasesPharmGKB PA128394708; -.
OtherEvolutionaryTrace Q9BZI7; -.
OtherGeneWiki UPF3B; -.
OtherGenomeRNAi 65109; -.
OtherNextBio 67302; -.
OtherPRO PR:Q9BZI7; -.



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