| Tag | Content |
|---|---|
| Uniprot ID | G1TCI1 |
| Entrez ID | 100352774 |
| Genbank protein ID | |
| Genbank nucleotide ID | XM_002715022.3 |
| Ensembl protein ID | ENSOCUP00000014488 |
| Ensembl nucleotide ID | ENSOCUG00000016862 |
| Gene name | Hedgehog protein |
| Gene symbol | SHH |
| Organism | Oryctolagus cuniculus |
| NCBI taxa ID | 9986 |
| Cleft type | |
| Developmental stage | |
| Data sources | Homology search |
| Reference | |
| Functional description | Intercellular signal essential for a variety of patterning events during development. |
| Sequence | MDEMLLLARC LLVVLVSSLL MCSGLACGPG RGFGKRRHPK KLTPLAYKQF IPNVAEKTLG 60 ASGRYEGKIS RNSERFKELT PNYNPDIIFK DEENTGADRL MTQRCKDKLN ALAISVMNQW 120 PGVKLRVTEG WDEDGHHSEE SLHYEGRAVD ITTSDRDRSK YGMLARLAVE AGFDWVYYES 180 KAHIHCSVKA ENSVAAKSGG CFPGSATVHL EQGGTKLVKD LRPGDRVLAA DDQGRLLYSD 240 FLTFLDRDDS ARKVFYVIET LEPRERLLLT AAHLLFVAPH NASAAGEPEL APGAGPPPGG 300 APGRRALFAS RVRPGQRVYV VAERDGDRRL LPAAVHSVTL REEATGAYAP LTAQGTILIN 360 RVLASCYAVI EEHSWAHRAF APFRLAHALL AALAPARTDR GGDPAAPGAA DAPGAPGPAG 420 IHWYSQLLYQ IGTWLLDSEA LHPLGMASQS S 451 |
Abbreviation :
CLO : cleft lip only. CPO : cleft palate only.
CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.
| Relation | Gene symbol | Entrez ID | UniProt ID | Cleft type | Developmental stage | Species | Evidence | Details |
|---|---|---|---|---|---|---|---|---|
| 1:1 ortholog | SHH | A0A452FUF0 | Capra hircus | Prediction | More>> | |||
| 1:1 ortholog | SHH | 6469 | Q15465 | Homo sapiens | Prediction | More>> | ||
| 1:1 ortholog | Shh | 20423 | Q62226 | CPO | E11.5, E12.0, E12.5, E13.0, E14.0, E13.5, E14.5, E14.5-15.0, E15.0, E16.0, E15.5, E16.5 | Mus musculus | Publication | More>> |
| 1:1 ortholog | SHH | 743371 | A0A2I3SFH2 | Pan troglodytes | Prediction | More>> | ||
| 1:1 ortholog | SHH | 100352774 | G1TCI1 | Oryctolagus cuniculus | Prediction | More>> | ||
| 1:1 ortholog | Shh | G3V6T0 | Rattus norvegicus | Prediction | More>> |
| GO ID | GO Term |
|---|---|
| GO:0009986 | cell surface |
| GO:0031012 | extracellular matrix |
| GO:0005615 | extracellular space |
| GO:0045121 | membrane raft |
| GO:0005886 | plasma membrane |
| GO:0005509 | calcium ion binding |
| GO:0005539 | glycosaminoglycan binding |
| GO:0043237 | laminin-1 binding |
| GO:0005113 | patched binding |
| GO:0008233 | peptidase activity |
| GO:0008270 | zinc ion binding |
| GO:0008209 | androgen metabolic process |
| GO:0048645 | animal organ formation |
| GO:0097190 | apoptotic signaling pathway |
| GO:0060840 | artery development |
| GO:0007411 | axon guidance |
| GO:0060020 | Bergmann glial cell differentiation |
| GO:0007596 | blood coagulation |
| GO:0001569 | branching involved in blood vessel morphogenesis |
| GO:0060445 | branching involved in salivary gland morphogenesis |
| GO:0001658 | branching involved in ureteric bud morphogenesis |
| GO:0060447 | bud outgrowth involved in lung branching |
| GO:0043010 | camera-type eye development |
| GO:0060070 | canonical Wnt signaling pathway |
| GO:0043369 | CD4-positive or CD8-positive, alpha-beta T cell lineage commitment |
| GO:0001708 | cell fate specification |
| GO:0071285 | cellular response to lithium ion |
| GO:0021930 | cerebellar granule cell precursor proliferation |
| GO:0003140 | determination of left/right asymmetry in lateral mesoderm |
| GO:0021904 | dorsal/ventral neural tube patterning |
| GO:0007398 | ectoderm development |
| GO:0048557 | embryonic digestive tract morphogenesis |
| GO:0042733 | embryonic digit morphogenesis |
| GO:0048617 | embryonic foregut morphogenesis |
| GO:0035115 | embryonic forelimb morphogenesis |
| GO:0035116 | embryonic hindlimb morphogenesis |
| GO:0048706 | embryonic skeletal system development |
| GO:0006897 | endocytosis |
| GO:0060664 | epithelial cell proliferation involved in salivary gland morphogenesis |
| GO:0030010 | establishment of cell polarity |
| GO:0048859 | formation of anatomical boundary |
| GO:0031069 | hair follicle morphogenesis |
| GO:0001947 | heart looping |
| GO:0007442 | hindgut morphogenesis |
| GO:0048839 | inner ear development |
| GO:0016539 | intein-mediated protein splicing |
| GO:0045109 | intermediate filament organization |
| GO:0060459 | left lung development |
| GO:0060174 | limb bud formation |
| GO:0060428 | lung epithelium development |
| GO:0060463 | lung lobe morphogenesis |
| GO:0060484 | lung-associated mesenchyme development |
| GO:0002320 | lymphoid progenitor cell differentiation |
| GO:0030539 | male genitalia development |
| GO:0060916 | mesenchymal cell proliferation involved in lung development |
| GO:0060783 | mesenchymal smoothened signaling pathway involved in prostate gland development |
| GO:0072205 | metanephric collecting duct development |
| GO:0072136 | metanephric mesenchymal cell proliferation involved in metanephros development |
| GO:0030901 | midbrain development |
| GO:0045445 | myoblast differentiation |
| GO:0014902 | myotube differentiation |
| GO:0046639 | negative regulation of alpha-beta T cell differentiation |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway |
| GO:0030336 | negative regulation of cell migration |
| GO:0090370 | negative regulation of cholesterol efflux |
| GO:1904339 | negative regulation of dopaminergic neuron differentiation |
| GO:2000357 | negative regulation of kidney smooth muscle cell differentiation |
| GO:2001054 | negative regulation of mesenchymal cell apoptotic process |
| GO:0032435 | negative regulation of proteasomal ubiquitin-dependent protein catabolic process |
| GO:0042130 | negative regulation of T cell proliferation |
| GO:0034244 | negative regulation of transcription elongation from RNA polymerase II promoter |
| GO:2000062 | negative regulation of ureter smooth muscle cell differentiation |
| GO:0045060 | negative thymic T cell selection |
| GO:0001755 | neural crest cell migration |
| GO:0007405 | neuroblast proliferation |
| GO:0048663 | neuron fate commitment |
| GO:0042475 | odontogenesis of dentin-containing tooth |
| GO:0014003 | oligodendrocyte development |
| GO:0002076 | osteoblast development |
| GO:0031016 | pancreas development |
| GO:0009949 | polarity specification of anterior/posterior axis |
| GO:0046638 | positive regulation of alpha-beta T cell differentiation |
| GO:0051781 | positive regulation of cell division |
| GO:0060769 | positive regulation of epithelial cell proliferation involved in prostate gland development |
| GO:0007228 | positive regulation of hh target transcription factor activity |
| GO:0033092 | positive regulation of immature T cell proliferation in thymus |
| GO:2000358 | positive regulation of kidney smooth muscle cell differentiation |
| GO:2000729 | positive regulation of mesenchymal cell proliferation involved in ureter development |
| GO:0002052 | positive regulation of neuroblast proliferation |
| GO:0048714 | positive regulation of oligodendrocyte differentiation |
| GO:0042307 | positive regulation of protein import into nucleus |
| GO:0061189 | positive regulation of sclerotome development |
| GO:0014858 | positive regulation of skeletal muscle cell proliferation |
| GO:0048643 | positive regulation of skeletal muscle tissue development |
| GO:0045880 | positive regulation of smoothened signaling pathway |
| GO:0051155 | positive regulation of striated muscle cell differentiation |
| GO:0045944 | positive regulation of transcription by RNA polymerase II |
| GO:2000063 | positive regulation of ureter smooth muscle cell differentiation |
| GO:0030177 | positive regulation of Wnt signaling pathway |
| GO:0045059 | positive thymic T cell selection |
| GO:0060516 | primary prostatic bud elongation |
| GO:0060523 | prostate epithelial cord elongation |
| GO:0016540 | protein autoprocessing |
| GO:0034504 | protein localization to nucleus |
| GO:0060782 | regulation of mesenchymal cell proliferation involved in prostate gland development |
| GO:0042481 | regulation of odontogenesis |
| GO:0060685 | regulation of prostatic bud formation |
| GO:0060458 | right lung development |
| GO:0060021 | roof of mouth development |
| GO:0060662 | salivary gland cavitation |
| GO:0048745 | smooth muscle tissue development |
| GO:0021938 | smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation |
| GO:0061053 | somite development |
| GO:0021513 | spinal cord dorsal/ventral patterning |
| GO:0021522 | spinal cord motor neuron differentiation |
| GO:0014706 | striated muscle tissue development |
| GO:0021978 | telencephalon regionalization |
| GO:0021794 | thalamus development |
| GO:0048538 | thymus development |
| GO:0030878 | thyroid gland development |
| GO:0060439 | trachea morphogenesis |
| GO:1905327 | tracheoesophageal septum formation |
| GO:0001570 | vasculogenesis |
| PROSITE ID | PROSITE Term |
|---|---|
| PS50817 | INTEIN_N_TER |