Logo
Home Search BLAST Integration Document Link Support Citation

Gene Information
Gene ID:35861
Symbol:PGRP-SC1b
Alias:CG8577|CT8705|PGRP-SC|SC1B
Organism:Drosophila melanogaster (Fly)
Chromosome:2R
Genetic Location:44E2-44E2
Physical Location:4600948-4601586 on NT_033778.3
Gene Type:protein-coding
Human Ortholog:This gene has no human ortholog.
Gene in Ethanol Study Datasets
Gene Information
Original ID1:PGRP-SC1b
P Value:3.19E-03
Note:Acute down-regulation, have human orthologs
Dataset Information
Name:17054780
Method:Microarray
Phenotype:Ethanol response
Publication:Morozova et al. Genome Biol. (2006) Transcriptional response to alcohol exposure in Drosophila melanogaster. PubMed
Summary:We assessed whole-genome transcriptional responses following alcohol exposure and demonstrate immediate down-regulation of genes affecting olfaction, rapid upregulation of biotransformation enzymes and, concomitant with development of tolerance, altered transcription of transcriptional regulators, proteases and metabolic enzymes, including biotransformation enzymes and enzymes associated with fatty acid biosynthesis. Functional tests of P-element disrupted alleles corresponding to genes with altered transcription implicated 75% of these in the response to alcohol, two-thirds of which have human orthologues. We performed analysis of variance to identify probe sets with significant differences in expression between the three treatments, and a false positive discovery rate of q < 0.05 to account for multiple tests.
Gene Information
Original ID1:PGRP-SC1b
Fold Change:>2
P Value:0.000114504
Note:Sensitive line>Resistant line
Dataset Information
Name:17973985
Method:Microarray
Phenotype:Ethanol sensitivity
Publication:Morozova et al. Genome Biol. (2007) Phenotypic and transcriptional response to selection for alcohol sensitivity in Drosophila melanogaster. PubMed
Summary:We performed artificial selection for alcohol sensitivity for 35 generations and created duplicate selection lines that are either highly sensitive or resistant to ethanol exposure along with unselected control lines. We used whole genome expression analysis to identify 1,678 probe sets with different expression levels between the divergent lines, pooled across replicates, at a false discovery rate of q < 0.001. We assessed to what extent genes with altered transcriptional regulation might be causally associated with ethanol sensitivity by measuring alcohol sensitivity of 37 co-isogenic P-element insertional mutations in 35 candidate genes, and found that 32 of these mutants differed in sensitivity to ethanol exposure from their co-isogenic controls. Furthermore, 23 of these novel genes have human orthologues.
Gene Refseq Sequence Annotation
mRNAProteinReference assembly Genomic
NM_136565.1NP_610409.1NT_033778.3 range: 4600948..4601586
Gene Ontology (GO) Annotation
GO IDGO TermCategoryEvidence (PubMed)
GO:0005576extracellular regionCellular ComponentISS (14738318|15199956)
GO:0005887integral to plasma membraneCellular ComponentNAS
GO:0005515protein bindingMolecular FunctionIEA
GO:0008745N-acetylmuramoyl-L-alanine amidase activityMolecular FunctionIDA (12496260)
GO:0042834peptidoglycan bindingMolecular FunctionTAS (15199956)
GO:0042834peptidoglycan bindingMolecular FunctionNAS
GO:0042834peptidoglycan bindingMolecular FunctionIDA (11106397)
GO:0042834peptidoglycan bindingMolecular FunctionISS (14738318)
GO:0045087innate immune responseBiological ProcessISS (14738318)
GO:0016045detection of bacteriumBiological ProcessNAS
GO:0009253peptidoglycan catabolic processBiological ProcessISS (14738318)
GO:0006952defense responseBiological ProcessNAS
GO:0045087innate immune responseBiological ProcessTAS (15199956)
Other Database Cross Links
NCBI Entrez Gene:35861
FLYBASE:FBgn0033327