ERGR - Ethanol-Related Gene Resource

Gene Information

Gene ID:

Symbol:

SFRS6

Full Name:

splicing factor, arginine/serine-rich 6

Alias:

B52|MGC5045|SRP55

Organism:

Homo sapiens (Human)

Chromosome:

Genetic Location:

20q12-q13.1

Physical Location:

41519931-41525654 on NC_000020.9

Gene Type:

protein-coding

Orthologs:

This gene has Fly: 41670 Mouse: 67996 ortholog(s) in other dataset(s).

Gene in Ethanol Study Datasets

Linkage Dataset

Marker

LOD

P value

Location (bp)

D20S119

43082264

Region:		41082264-45082264
Phenotype:		Alcoholism phenotype along with age, gender, and P300 or constraint
Name:		15211641
Method:		Linkage
Publication:		Hill et al. Am J Med Genet B Neuropsychiatr Genet. (2004) A genome wide search for alcoholism susceptibility genes. PubMed
Summary:		A total of 360 markers for 22 autosomes were spaced at an average distance of 9.4cMand genotyping performed for 330 members of these multiplex families. Extensive clinical data, personality variation, and event-related potential characteristics were available for reducing heterogeneity and detecting robust linkage signals. Multipoint linkage analysis using different analytic strategies give strong support for loci on chromosomes 1, 2, 6, 7, 10, 12, 14, 16, and 17. Thirty five markers with LOD score >2.0 at baseline using the binary alcoholism phenotype along with age, gender, and P300 or constraint (Table III). Here we listed the genes between two near markers or genes near a separate marker (within 2Mb).

Gene Refseq Sequence Annotation

mRNA	Protein	Reference assembly Genomic
NM_006275.4	NP_006266.2	NC_000020.9 range: 41519931..41525654

Gene Ontology (GO) Annotation

GO ID	GO Term	Category	Evidence (PubMed)
GO:0005634	nucleus	Cellular Component	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0003723	RNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IPI (17353931)
GO:0000398	nuclear mRNA splicing, via spliceosome	Biological Process	EXP (12226669)
GO:0006376	mRNA splice site selection	Biological Process	TAS (7556075)
GO:0008380	RNA splicing	Biological Process	IEA