deTS Results for Completion status of test: Incomplete - other reason

Traits Information:

Trait ID:

1999

6020_34
Completion status of test: Incomplete - other reason
UK Biobank (UKBB)
Neale Lab, 2018
http://biobank.ctsu.ox.ac.uk/crystal/field.cgi?id=6020
# cases = 135 | # controls = 53872
# SNPs = 5740479 | # genes = 21840
0.988
p (gene) < 0.05:  # TAGs = 1115
p (gene) < 0.01:  # TAGs = 220
p (gene) < 0.001:  # TAGs = 36
p (gene) < 1.0E-4:  # TAGs = 7
p (gene) < 1.0E-5: # TAGs = 2

Manhattan Plot of All SNPs in the GWAS



Manhattan Plot of All Genes in the GWAS

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deTS Enrichment Analysis Using the GTEx Panel

p < 0.05 p < 0.01 p < 0.001 0.9360.7820.3870.6620.4550.7250.6620.9360.5940.8320.5250.5250.6620.5250.9360.5940.5940.5940.7820.2640.8320.2640.2120.1280.7250.1280.3870.2640.5250.2640.1280.3870.2640.8740.4550.2640.9890.7820.1660.09640.05050.2640.5940.5940.5250.3230.9570.570.9290.720.8440.720.9760.9940.9760.9760.9760.9940.9940.9760.9760.9940.8440.570.8440.570.0990.4160.0990.4160.02560.4160.4160.280.8440.0990.720.720.1730.05230.8440.8440.01160.9290.720.280.280.5680.570.720.0990.4160.0990.280.3390.7080.7080.7081.00.7081.01.00.7080.7081.01.00.7081.01.00.7080.7080.7080.7080.3390.3390.3390.7080.7080.7081.00.7080.7080.3391.00.7080.7080.7080.3391.00.02961.01.00.3390.7081.00.3390.3391.01.00.3391.0Adipose - SubcutaneousAdipose - Visceral (Omentum)Artery - AortaArtery - CoronaryArtery - TibialBrain - AmygdalaBrain - Anterior cingulate cortex (BA24)Brain - Caudate (basal ganglia)Brain - Cerebellar HemisphereBrain - CerebellumBrain - CortexBrain - Frontal Cortex (BA9)Brain - HippocampusBrain - HypothalamusBrain - Nucleus accumbens (basal ganglia)Brain - Putamen (basal ganglia)Brain - Spinal cord (cervical c-1)Brain - Substantia nigraBreast - Mammary TissueColon - SigmoidColon - TransverseEsophagus - Gastroesophageal JunctionEsophagus - MucosaEsophagus - MuscularisStomachHeart - Atrial AppendageHeart - Left VentricleAdrenal GlandKidney-CortexLiverLungMinor Salivary GlandMuscle - SkeletalNerve - TibialOvaryPancreasPituitaryProstateSkin - Not Sun Exposed (Suprapubic)Skin - Sun Exposed (Lower leg)Small Intestine - Terminal IleumSpleenTestisThyroidUterusVaginaWhole Blood

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deTS Enrichment Analysis Using the ENCODE Panel

p < 0.05 p < 0.01 p < 0.001 0.9380.7790.2570.004150.450.8330.009695.19E-40.6560.9730.160.9830.1560.8330.0230.3810.01550.5910.0230.160.7240.310.7240.4460.3780.8330.520.2050.2570.2570.7770.7240.660.7210.9090.2540.3810.2570.520.7240.3160.9580.3810.450.1460.5260.3740.8190.5280.5280.3710.8180.9150.8190.08020.9150.2410.6840.08020.3740.04080.2440.1460.5280.3740.8170.5280.3730.6830.3740.5280.2440.1460.04080.3710.9930.1460.2420.3730.5260.8190.6840.3740.6840.1460.9150.2440.6840.3190.6910.6921.00.6921.00.3180.3180.6910.6920.6920.6920.3180.6920.3190.6920.6920.6920.6921.00.6921.00.3190.3180.3180.6920.6921.00.6920.6920.3180.6920.004810.6911.00.3180.3191.00.6920.6921.01.00.6921.0Subcutaneous Adipose TissueOmental Fat PadThoracic AortaCerebellumFrontal CortexSpinal CordOccipital LobeParietal LobeTemporal LobeDiencephalonBreast EpitheliumCamera type eyeSigmoid ColonTransverse ColonEsophagus Muscularis MucosaEsophagus Squamous EpitheliumGastroesophageal SphincterStomachHeartHeart - Left VentricleRight Atrium Auricular RegionAdrenal GlandMetanephrosLiverRight Lobe of LiverLungUpper Lobe of Left LungSkeletal Muscle TissueGastrocnemius MedialisTongueTibial NerveOvaryBody of PancreasPeyer's PatchProstate GlandSuprapubic SkinLower Leg SkinSkin of BodySpleenTestisThyroid GlandUmbilical CordUrinary BladderUterus

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