deTS Results for Malignant neoplasm of testis

Traits Information:

Trait ID:

976

C3_TESTIS
Malignant neoplasm of testis
UK Biobank (UKBB)
Neale Lab, 2018
N/A
# cases = 432 | # controls = 360762
# SNPs = 7904418 | # genes = 21889
1.03
p (gene) < 0.05:  # TAGs = 1284
p (gene) < 0.01:  # TAGs = 296
p (gene) < 0.001:  # TAGs = 64
p (gene) < 1.0E-4:  # TAGs = 21
p (gene) < 1.0E-5: # TAGs = 4

Manhattan Plot of All SNPs in the GWAS




Manhattan Plot of All Genes in the GWAS


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deTS Enrichment Analysis Using the GTEx Panel


p < 0.05 p < 0.01 p < 0.001 p < 1.0E-4 0.7670.2760.6520.5890.3940.7670.5890.8160.9450.9750.7120.8160.7670.9230.8160.8940.3330.7670.5230.3940.110.03220.4580.180.7670.9840.9970.8160.110.4580.3940.2760.4580.3940.7120.06170.06170.7120.2760.3940.2230.3330.9230.180.7120.2250.180.4930.6260.3650.6260.6260.9230.750.9660.9880.9970.9660.9230.9230.9880.9660.9230.750.9230.6260.8510.4930.4930.2530.6260.4930.9230.9880.750.3650.9230.6260.3650.2530.2530.6260.1650.750.3650.4930.3650.3630.2530.6260.1650.9230.1650.2530.6150.6150.3370.1470.05220.8780.8781.01.01.00.8781.00.8781.01.01.00.6150.8780.3370.6150.6150.6150.3370.6150.1470.6150.8781.00.8780.8780.3370.3370.8780.6150.6150.8780.3370.3370.6150.6150.6140.1470.3370.6150.6150.3370.8781.00.4870.4870.4870.4871.01.01.01.01.01.01.01.01.01.01.01.01.01.00.4870.4870.4871.00.4871.01.01.01.01.00.4870.1351.00.4871.00.4871.00.1350.4871.01.01.00.4870.4870.4870.4871.01.0Adipose - SubcutaneousAdipose - Visceral (Omentum)Artery - AortaArtery - CoronaryArtery - TibialBrain - AmygdalaBrain - Anterior cingulate cortex (BA24)Brain - Caudate (basal ganglia)Brain - Cerebellar HemisphereBrain - CerebellumBrain - CortexBrain - Frontal Cortex (BA9)Brain - HippocampusBrain - HypothalamusBrain - Nucleus accumbens (basal ganglia)Brain - Putamen (basal ganglia)Brain - Spinal cord (cervical c-1)Brain - Substantia nigraBreast - Mammary TissueColon - SigmoidColon - TransverseEsophagus - Gastroesophageal JunctionEsophagus - MucosaEsophagus - MuscularisStomachHeart - Atrial AppendageHeart - Left VentricleAdrenal GlandKidney-CortexLiverLungMinor Salivary GlandMuscle - SkeletalNerve - TibialOvaryPancreasPituitaryProstateSkin - Not Sun Exposed (Suprapubic)Skin - Sun Exposed (Lower leg)Small Intestine - Terminal IleumSpleenTestisThyroidUterusVaginaWhole Blood

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deTS Enrichment Analysis Using the ENCODE Panel


p < 0.05 p < 0.01 p < 0.001 p < 1.0E-4 0.5520.08770.08930.4850.08930.7930.002890.4810.01620.1940.4850.5520.9090.740.4190.1940.6180.6180.9990.9960.9710.4770.4850.4810.8380.840.1180.7930.7930.6810.8350.740.740.8380.4810.4150.2420.6810.2420.9370.2960.5520.5520.7930.8290.4540.4550.9590.2230.9990.220.8280.3280.9090.3290.720.9590.8290.8290.1410.4550.3290.9590.8290.9590.9080.2230.8280.8280.8290.08410.8290.3290.08410.7170.4550.4550.7180.5890.2220.3290.4550.720.9090.1410.5910.8290.8290.8770.1450.3351.00.8770.8770.6110.8770.8770.8770.3350.6131.00.1460.6130.3350.6130.3350.8770.3350.8771.00.3350.8770.8770.6130.6130.8770.8770.05160.6110.3350.8770.3340.3340.6120.3351.00.8770.6130.3351.00.8770.05160.4860.02410.4861.01.01.01.01.01.00.4861.01.01.00.4861.01.00.4861.01.01.01.01.00.4861.00.4850.4860.4861.00.4860.4861.00.02421.01.00.4851.01.01.01.00.4860.1351.01.00.0242Subcutaneous Adipose TissueOmental Fat PadThoracic AortaCerebellumFrontal CortexSpinal CordOccipital LobeParietal LobeTemporal LobeDiencephalonBreast EpitheliumCamera type eyeSigmoid ColonTransverse ColonEsophagus Muscularis MucosaEsophagus Squamous EpitheliumGastroesophageal SphincterStomachHeartHeart - Left VentricleRight Atrium Auricular RegionAdrenal GlandMetanephrosLiverRight Lobe of LiverLungUpper Lobe of Left LungSkeletal Muscle TissueGastrocnemius MedialisTongueTibial NerveOvaryBody of PancreasPeyer's PatchProstate GlandSuprapubic SkinLower Leg SkinSkin of BodySpleenTestisThyroid GlandUmbilical CordUrinary BladderUterus

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