Pulmonary Arterial Hypertension KnowledgeBase (bioinfom_tsdb)
bioinfom_tsdb
Pulmonary Arterial Hypertension KnowledgeBase
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

117581

Name

TWIST2

Synonymous

twist family bHLH transcription factor 2;TWIST2;twist family bHLH transcription factor 2

Definition

class A basic helix-loop-helix protein 39|dermis-expressed protein 1|twist basic helix-loop-helix transcription factor 2|twist homolog 2|twist-related bHLH protein Dermo1|twist-related protein 2

Position

2q37.3

Gene Type

protein-coding

Mutation summary:

Mutations in domains
Mutational pattern in 17 major cancer types
LoF vs missense mutations
All the copy number variations from COSMIC database V72
All the mutations from COSMIC database V72

Mutation summary in protein domains

Top

We used uniprot protein structure data from ensemble BioMart database. The size of circle shows the relative mutation number.

The non-synonymous (top) and synonymous (bottom) mutational percentage for various cancers

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The non-synonymous mutational pattern in 17 major cancer types.
The synonymous mutational pattern in 17 major cancer types.

Loss of Function mutations compare to missense mutations

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Loss of Function mutations compare to missense mutation.
The ratio of the loss-of-function mutations over missense mutations is 0.00.

The copy number variations for various cancers

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The copy number variations in 17 major cancer groups: 1; Breast, 2; Central nervous system, 3; Cervix, 4; Endometrium, 5; Haematopoietic and lymphoid_tissue, 6; Kidney, 7; Large intestine, 8; Liver, 9; Lung, 10; NS, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary tract

The copy number variations in 17 major cancer types: 1; Breast, 2; Central nervous system, 3; Cervix, 4; Endometrium, 5; Haematopoietic and lymphoid_tissue, 6; Kidney, 7; Large intestine, 8; Liver, 9; Lung, 10; Not specific, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary tract

COSMIC somatic mutation [Top]

Mutation (CDS; AA; Chr)

Site

Histology

Mutation Type

c.455G>A; p.G152D; 2:238848670-238848670

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.54C>T; p.S18S; 2:238848269-238848269

large_intestinecarcinoma; adenocarcinomaSubstitution - coding silent

c.438C>T; p.S146S; 2:238848653-238848653

oesophaguscarcinoma; adenocarcinomaSubstitution - coding silent

c.435C>A; p.F145L; 2:238848650-238848650

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.227G>A; p.R76H; 2:238848442-238848442

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.268C>T; p.R90C; 2:238848483-238848483

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.180C>T; p.S60S; 2:238848395-238848395

breastcarcinomaSubstitution - coding silent

c.219G>A; p.V73V; 2:238848434-238848434

large_intestinecarcinoma; adenocarcinomaSubstitution - coding silent

c.75G>T; p.Q25H; 2:238848290-238848290

thyroidother; neoplasmSubstitution - Missense


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