Pulmonary Arterial Hypertension KnowledgeBase (bioinfom_tsdb)
bioinfom_tsdb
Pulmonary Arterial Hypertension KnowledgeBase
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

4692

Name

NDN

Synonymous

necdin, melanoma antigen (MAGE) family member;NDN;necdin, melanoma antigen (MAGE) family member

Definition

Prader-Willi syndrome chromosome region|necdin|necdin homolog

Position

15q11.2-q12

Gene Type

protein-coding

Mutation summary:

Mutations in domains
Mutational pattern in 17 major cancer types
LoF vs missense mutations
All the copy number variations from COSMIC database V72
All the mutations from COSMIC database V72

Mutation summary in protein domains

Top

We used uniprot protein structure data from ensemble BioMart database. The size of circle shows the relative mutation number.

The non-synonymous (top) and synonymous (bottom) mutational percentage for various cancers

Top

The non-synonymous mutational pattern in 17 major cancer types.
The synonymous mutational pattern in 17 major cancer types.

Loss of Function mutations compare to missense mutations

Top

Loss of Function mutations compare to missense mutation.
The ratio of the loss-of-function mutations over missense mutations is 0.10.

The copy number variations for various cancers

Top

There is no record for NDN

COSMIC somatic mutation [Top]

Mutation (CDS; AA; Chr)

Site

Histology

Mutation Type

c.837G>T; p.L279L; 15:23686381-23686381

lungcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.252C>T; p.S84S; 15:23686966-23686966

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.424C>T; p.R142C; 15:23686794-23686794

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.768C>A; p.P256P; 15:23686450-23686450

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - coding silent

c.457C>A; p.L153M; 15:23686761-23686761

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.249G>T; p.P83P; 15:23686969-23686969

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.348G>T; p.K116N; 15:23686870-23686870

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.523G>A; p.E175K; 15:23686695-23686695

skinmalignant_melanomaSubstitution - Missense

c.663C>G; p.P221P; 15:23686555-23686555

oesophaguscarcinoma; adenocarcinomaSubstitution - coding silent

c.48G>T; p.E16D; 15:23687170-23687170

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.325G>C; p.V109L; 15:23686893-23686893

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.195C>T; p.G65G; 15:23687023-23687023

pancreascarcinoid-endocrine_tumourSubstitution - coding silent

c.20A>G; p.D7G; 15:23687198-23687198

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.698A>C; p.K233T; 15:23686520-23686520

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.851A>G; p.K284R; 15:23686367-23686367

oesophaguscarcinoma; adenocarcinomaSubstitution - Missense

c.851A>C; p.K284T; 15:23686367-23686367

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.654G>T; p.G218G; 15:23686564-23686564

lungcarcinoma; small_cell_carcinomaSubstitution - coding silent

c.684C>T; p.F228F; 15:23686534-23686534

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - coding silent

c.851A>G; p.K284R; 15:23686367-23686367

breastcarcinoma; ductal_carcinomaSubstitution - Missense

c.284C>T; p.P95L; 15:23686934-23686934

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.284C>T; p.P95L; 15:23686934-23686934

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.392G>T; p.S131I; 15:23686826-23686826

livercarcinomaSubstitution - Missense

c.392G>T; p.S131I; 15:23686826-23686826

livercarcinomaSubstitution - Missense

c.780C>A; p.F260L; 15:23686438-23686438

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.784T>C; p.W262R; 15:23686434-23686434

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.563C>A; p.T188K; 15:23686655-23686655

livercarcinomaSubstitution - Missense

c.563C>A; p.T188K; 15:23686655-23686655

livercarcinomaSubstitution - Missense

c.88delG; p.E30fs*17; 15:23687130-23687130

lungcarcinoma; adenocarcinomaDeletion - Frameshift

c.425G>A; p.R142H; 15:23686793-23686793

breastcarcinomaSubstitution - Missense

c.357C>G; p.I119M; 15:23686861-23686861

urinary_tract; bladdercarcinoma; transitional_cell_carcinomaSubstitution - Missense

c.357C>G; p.I119M; 15:23686861-23686861

urinary_tract; bladdercarcinomaSubstitution - Missense

c.533G>T; p.R178M; 15:23686685-23686685

pancreascarcinomaSubstitution - Missense

c.609C>T; p.R203R; 15:23686609-23686609

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.609C>T; p.R203R; 15:23686609-23686609

livercarcinomaSubstitution - coding silent

c.609C>T; p.R203R; 15:23686609-23686609

livercarcinomaSubstitution - coding silent

c.624C>A; p.S208R; 15:23686594-23686594

kidneycarcinoma; clear_cell_renal_cell_carcinomaSubstitution - Missense

c.603G>A; p.K201K; 15:23686615-23686615

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.551G>A; p.R184H; 15:23686667-23686667

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.685G>T; p.G229W; 15:23686533-23686533

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.626C>T; p.A209V; 15:23686592-23686592

large_intestine; coloncarcinomaSubstitution - Missense

c.803G>A; p.R268H; 15:23686415-23686415

stomachcarcinoma; intestinal_adenocarcinomaSubstitution - Missense

c.659G>C; p.R220P; 15:23686559-23686559

skinmalignant_melanomaSubstitution - Missense

c.661C>A; p.P221T; 15:23686557-23686557

livercarcinoma; hepatocellular_carcinomaSubstitution - Missense

c.864G>A; p.Q288Q; 15:23686354-23686354

skinmalignant_melanomaSubstitution - coding silent

c.102G>A; p.P34P; 15:23687116-23687116

kidneycarcinoma; clear_cell_renal_cell_carcinomaSubstitution - coding silent

c.607C>T; p.R203C; 15:23686611-23686611

central_nervous_system; brainglioma; astrocytoma_Grade_IVSubstitution - Missense

c.926C>T; p.P309L; 15:23686292-23686292

skin; facecarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.483C>T; p.H161H; 15:23686735-23686735

kidneycarcinoma; clear_cell_renal_cell_carcinomaSubstitution - coding silent

c.774C>T; p.Y258Y; 15:23686444-23686444

oesophaguscarcinoma; adenocarcinomaSubstitution - coding silent

c.746G>A; p.R249H; 15:23686472-23686472

pancreascarcinomaSubstitution - Missense

c.666G>A; p.W222*; 15:23686552-23686552

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Nonsense

c.101C>T; p.P34L; 15:23687117-23687117

central_nervous_system; braingliomaSubstitution - Missense

c.666G>A; p.W222*; 15:23686552-23686552

urinary_tract; bladdercarcinomaSubstitution - Nonsense

c.731A>G; p.Y244C; 15:23686487-23686487

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.555G>A; p.M185I; 15:23686663-23686663

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.624C>T; p.S208S; 15:23686594-23686594

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.137T>C; p.L46P; 15:23687081-23687081

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.5C>G; p.S2*; 15:23687213-23687213

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Nonsense

c.86C>T; p.S29L; 15:23687132-23687132

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.86C>T; p.S29L; 15:23687132-23687132

skinmalignant_melanomaSubstitution - Missense

c.829G>A; p.E277K; 15:23686389-23686389

skinmalignant_melanomaSubstitution - Missense

c.59C>T; p.S20F; 15:23687159-23687159

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.388G>A; p.G130S; 15:23686830-23686830

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.254C>T; p.A85V; 15:23686964-23686964

ovaryother; neoplasmSubstitution - Missense

c.300G>A; p.Q100Q; 15:23686918-23686918

lungcarcinoma; small_cell_carcinomaSubstitution - coding silent

c.927C>T; p.P309P; 15:23686291-23686291

skinmalignant_melanomaSubstitution - coding silent

c.107C>T; p.A36V; 15:23687111-23687111

central_nervous_system; braingliomaSubstitution - Missense

c.769G>A; p.E257K; 15:23686449-23686449

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.534_535GG>AA; p.V179M; 15:23686683-23686684

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.960G>A; p.E320E; 15:23686258-23686258

skinmalignant_melanomaSubstitution - coding silent

c.825C>A; p.I275I; 15:23686393-23686393

lungcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.608G>A; p.R203H; 15:23686610-23686610

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.608G>A; p.R203H; 15:23686610-23686610

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.608G>A; p.R203H; 15:23686610-23686610

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.14G>T; p.S5I; 15:23687204-23687204

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.51C>A; p.A17A; 15:23687167-23687167

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.908C>T; p.A303V; 15:23686310-23686310

skinmalignant_melanomaSubstitution - Missense

c.222G>A; p.A74A; 15:23686996-23686996

ovarycarcinoma; serous_carcinomaSubstitution - coding silent

c.825C>T; p.I275I; 15:23686393-23686393

skinmalignant_melanomaSubstitution - coding silent

c.726G>A; p.M242I; 15:23686492-23686492

skinmalignant_melanomaSubstitution - Missense

c.726G>A; p.M242I; 15:23686492-23686492

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.462C>T; p.H154H; 15:23686756-23686756

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.745C>T; p.R249C; 15:23686473-23686473

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.745C>T; p.R249C; 15:23686473-23686473

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.805G>A; p.E269K; 15:23686413-23686413

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.805G>A; p.E269K; 15:23686413-23686413

skin; trunkmalignant_melanomaSubstitution - Missense

c.805G>A; p.E269K; 15:23686413-23686413

breastcarcinomaSubstitution - Missense

c.805G>A; p.E269K; 15:23686413-23686413

skinmalignant_melanomaSubstitution - Missense

c.923A>C; p.N308T; 15:23686295-23686295

oesophaguscarcinoma; adenocarcinomaSubstitution - Missense

c.621G>T; p.E207D; 15:23686597-23686597

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.288G>A; p.A96A; 15:23686930-23686930

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.241C>T; p.Q81*; 15:23686977-23686977

haematopoietic_and_lymphoid_tissuelymphoid_neoplasm; mantle_cell_lymphomaSubstitution - Nonsense

c.828G>A; p.M276I; 15:23686390-23686390

upper_aerodigestive_tract; mouthcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.828G>A; p.M276I; 15:23686390-23686390

skinmalignant_melanomaSubstitution - Missense

c.659G>A; p.R220Q; 15:23686559-23686559

large_intestine; coloncarcinomaSubstitution - Missense

c.828G>A; p.M276I; 15:23686390-23686390

upper_aerodigestive_tract; mouthcarcinomaSubstitution - Missense

c.913C>T; p.R305W; 15:23686305-23686305

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.271G>C; p.A91P; 15:23686947-23686947

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.121C>T; p.P41S; 15:23687097-23687097

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.427A>C; p.T143P; 15:23686791-23686791

urinary_tract; bladdercarcinomaSubstitution - Missense

c.517C>T; p.P173S; 15:23686701-23686701

ovaryother; neoplasmSubstitution - Missense

c.69C>T; p.H23H; 15:23687149-23687149

thyroidcarcinoma; anaplastic_carcinomaSubstitution - coding silent

c.69C>T; p.H23H; 15:23687149-23687149

thyroidcarcinoma; anaplastic_carcinomaSubstitution - coding silent

c.794G>A; p.R265Q; 15:23686424-23686424

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.614C>G; p.A205G; 15:23686604-23686604

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

prostatecarcinoma; adenocarcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

prostatecarcinoma; adenocarcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.765G>A; p.P255P; 15:23686453-23686453

breastcarcinomaSubstitution - coding silent

c.262C>A; p.P88T; 15:23686956-23686956

autonomic_ganglianeuroblastomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.262C>A; p.P88T; 15:23686956-23686956

upper_aerodigestive_tract; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.877C>G; p.R293G; 15:23686341-23686341

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.162C>T; p.A54A; 15:23687056-23687056

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.936C>T; p.H312H; 15:23686282-23686282

skinmalignant_melanomaSubstitution - coding silent

c.497C>T; p.A166V; 15:23686721-23686721

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.324C>A; p.Y108*; 15:23686894-23686894

lungcarcinoma; small_cell_carcinomaSubstitution - Nonsense

c.297G>A; p.V99V; 15:23686921-23686921

breastcarcinomaSubstitution - coding silent

c.453C>T; p.F151F; 15:23686765-23686765

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - coding silent

c.681C>T; p.T227T; 15:23686537-23686537

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.285G>A; p.P95P; 15:23686933-23686933

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.872C>A; p.P291H; 15:23686346-23686346

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.627C>T; p.A209A; 15:23686591-23686591

central_nervous_system; brainglioma; astrocytoma_Grade_IVSubstitution - coding silent

c.599T>A; p.V200E; 15:23686619-23686619

oesophaguscarcinoma; adenocarcinomaSubstitution - Missense

c.734T>C; p.L245P; 15:23686484-23686484

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.877C>T; p.R293*; 15:23686341-23686341

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Nonsense

c.94delG; p.V32fs*15; 15:23687124-23687124

large_intestine; coloncarcinoma; adenocarcinomaDeletion - Frameshift

c.628G>A; p.V210I; 15:23686590-23686590

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.247C>T; p.P83S; 15:23686971-23686971

skinmalignant_melanomaSubstitution - Missense

c.717C>A; p.F239L; 15:23686501-23686501

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.105C>T; p.S35S; 15:23687113-23687113

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.619G>A; p.E207K; 15:23686599-23686599

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.63G>T; p.E21D; 15:23687155-23687155

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.487A>G; p.M163V; 15:23686731-23686731

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.505A>G; p.K169E; 15:23686713-23686713

lungcarcinoma; small_cell_carcinomaSubstitution - Missense

c.690C>T; p.D230D; 15:23686528-23686528

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.950G>A; p.S317N; 15:23686268-23686268

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.248C>T; p.P83L; 15:23686970-23686970

oesophagus; lower_thirdcarcinoma; adenocarcinomaSubstitution - Missense

c.669G>A; p.K223K; 15:23686549-23686549

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.876C>T; p.S292S; 15:23686342-23686342

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.876C>T; p.S292S; 15:23686342-23686342

skinmalignant_melanomaSubstitution - coding silent

c.612C>T; p.G204G; 15:23686606-23686606

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.796G>C; p.A266P; 15:23686422-23686422

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.875C>T; p.S292F; 15:23686343-23686343

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.375G>A; p.V125V; 15:23686843-23686843

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.251G>T; p.S84I; 15:23686967-23686967

ovaryother; neoplasmSubstitution - Missense

c.251G>T; p.S84I; 15:23686967-23686967

ovaryother; neoplasmSubstitution - Missense

c.874T>C; p.S292P; 15:23686344-23686344

oesophaguscarcinoma; adenocarcinomaSubstitution - Missense

c.389G>A; p.G130D; 15:23686829-23686829

large_intestine; coloncarcinomaSubstitution - Missense

c.102G>T; p.P34P; 15:23687116-23687116

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.510G>C; p.A170A; 15:23686708-23686708

lungcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.625G>A; p.A209T; 15:23686593-23686593

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.566G>A; p.G189D; 15:23686652-23686652

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.625G>A; p.A209T; 15:23686593-23686593

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.21T>C; p.D7D; 15:23687197-23687197

oesophaguscarcinoma; adenocarcinomaSubstitution - coding silent

c.717C>T; p.F239F; 15:23686501-23686501

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.717C>T; p.F239F; 15:23686501-23686501

oesophaguscarcinoma; adenocarcinomaSubstitution - coding silent

c.717C>T; p.F239F; 15:23686501-23686501

skinmalignant_melanomaSubstitution - coding silent

c.717C>T; p.F239F; 15:23686501-23686501

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.246C>A; p.A82A; 15:23686972-23686972

lungcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.253G>A; p.A85T; 15:23686965-23686965

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.309C>T; p.H103H; 15:23686909-23686909

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - coding silent

c.309C>T; p.H103H; 15:23686909-23686909

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - coding silent

c.108G>A; p.A36A; 15:23687110-23687110

skinmalignant_melanomaSubstitution - coding silent

c.858C>T; p.D286D; 15:23686360-23686360

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.88G>T; p.E30*; 15:23687130-23687130

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Nonsense

c.523G>C; p.E175Q; 15:23686695-23686695

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.128G>A; p.S43N; 15:23687090-23687090

skinmalignant_melanomaSubstitution - Missense

c.616A>G; p.R206G; 15:23686602-23686602

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.249G>A; p.P83P; 15:23686969-23686969

endometriumcarcinoma; endometrioid_carcinomaSubstitution - coding silent

c.509C>T; p.A170V; 15:23686709-23686709

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense


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