Pulmonary Arterial Hypertension KnowledgeBase (bioinfom_tsdb)
bioinfom_tsdb
Pulmonary Arterial Hypertension KnowledgeBase
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

4928

Name

NUP98

Synonymous

ADIR2|NUP196|NUP96;nucleoporin 98kDa;NUP98;nucleoporin 98kDa

Definition

GLFG-repeat containing nucleoporin|Nup98-Nup96|nuclear pore complex protein Nup98-Nup96|nucleoporin 98kD

Position

11p15.5

Gene Type

protein-coding

Gene Regulation:

Upstream microRNAs
Transcription Factors
Post Transcriptional Modification From dbPTM
Methylation Profile From DiseaseMeth database

Experimentally verified miRNA from miRTarBase   [Top]

Experimentally validated miRNA-TS gene regulation information.

Transcription Factors   [Top]

Regulation From TransFac database

Nup98(h) + rae1(h) <==> Nup98(h):rae1(h) (binding)
rae1(h) + Nup98(h) <==> rae1(h):Nup98(h) (binding)
rae1(m) + Nup98(h) <==> rae1(m):Nup98(h) (binding)
Nup98(h) + MATS1(h) <==> Nup98(h):MATS1(h) (binding)
Nup98(h) + parp11(h) <==> Nup98(h):parp11(h) (binding)
Nup98(h) + qrich2(h) <==> Nup98(h):qrich2(h) (binding)
NUP98(h) --> Nup98(h) (expression).
NUP98(h) --> Nup98-isoform3(h) (expression).
NUP98(h) --> Nup98-isoform1(h) (expression).
NUP98(h) --> Nup98-isoform2(h) (expression).
NUP98(h) --> Nup98-isoform4(h) (expression).
NUP98(h) --> Nup98-isoform5(h) (expression).

Post Transcriptional Modification   [Top]

Location (AA)

PTM type

Literature

Database

608Phosphoserine.Swiss-Prot 53.0
612Phosphoserine.Swiss-Prot 53.0
623Phosphoserine.Swiss-Prot 53.0
839Phosphoserine.Swiss-Prot 53.0
888Phosphoserine.Swiss-Prot 53.0
1028Phosphoserine.Swiss-Prot 53.0
1060Phosphoserine.Swiss-Prot 53.0
623Phosphoserine15302935;17081983Phospho.ELM 6.0
888Phosphoserine16565220;17081983Phospho.ELM 6.0
608Phosphoserine17081983Phospho.ELM 6.0
612Phosphoserine17081983Phospho.ELM 6.0
839Phosphoserine17081983Phospho.ELM 6.0

Methylation Profile   [Top]

Chromosome

Location

Source

chr11

Promoter: 3774968 - 3776968Agilent_014791

chr11

Promoter: 3774968 - 3776968GSE27584

chr11

Promoter: 3774968 - 3776968GSE27584

chr11

Promoter: 3774968 - 3776968GSE27584

chr11

Promoter: 3774968 - 3776968GSE27584

chr11

Promoter: 3774968 - 3776968Agilent_014791_44K


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