DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LAPSFEQRVQVML
Uniprot ID:
Q6F5E8
Source protein:
Capping protein, Arp2/3 and myosin-I linker protein 2
Source gene:
CARMIL2
Class:
DEG_ODPH_VHL_1
Location:
1205:1217
E3 ligase:
VHL
DEGRON score:
0.678
ASA_SCORE:
77.2
COIL:
0.4685
CONS_SCORE:
0.2601
DSS_SCORE:
0.5302
HELIX:
0.3302
FCONS_SCORE:
0.9325
RIG_SCORE:
0.7897
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F1209I
SIDM00572
Gastric Carcinoma
GDSC
LAPSFEQRVQVML
DEG_ODPH_VHL_1
0.6304
p.F1209I
NUGC-3
stomach
COSMIC
LAPSFEQRVQVML
DEG_ODPH_VHL_1
0.6304
p.R1224Q
SIDM00136
Colorectal Carcinoma
GDSC
LAPSFEQRVQVML
DEG_ODPH_VHL_1
0.1389
p.R1224Q
HT-29
large_intestine
COSMIC
LAPSFEQRVQVML
DEG_ODPH_VHL_1
0.1389
p.R1200W
SIDM00214
Colorectal Carcinoma
GDSC
LAPSFEQRVQVML
DEG_ODPH_VHL_1
0.1944
p.R1200W
SNU-407
large_intestine
COSMIC
LAPSFEQRVQVML
DEG_ODPH_VHL_1
0.1944
p.Q1199E
KP-N-RT-BM-1
autonomic_ganglia
COSMIC
LAPSFEQRVQVML
DEG_ODPH_VHL_1
0.1667
Drug responses associated with CARMIL2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPSFEQRVQVML
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6F5E8
Capping protein, Arp2/3 and myosin-I linker protein 2
DEG_ODPH_VHL_1
1205:1217
LAPSFEQRVQVML
VHL
0.678
More...