DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPSGTSVPFWVRM
Uniprot ID:
Q14773
Source protein:
Intercellular adhesion molecule 4
Source gene:
ICAM4
Class:
DEG_ODPH_VHL_1
Location:
39:52
E3 ligase:
VHL
DEGRON score:
0.8722
ASA_SCORE:
62.5143
COIL:
0.6532
CONS_SCORE:
0.7612
DSS_SCORE:
0.411
HELIX:
0.0166
FCONS_SCORE:
1.3351
RIG_SCORE:
0.7091
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L39F
TCGA-AC-A23H
BRCA
TCGA
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.6981
p.L39F
TCGA-EB-A41A
SKCM
TCGA
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.6981
p.L39F
DO2401
BRCA
ICGC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.6981
p.L39F
DO37429
SKCM
ICGC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.6981
p.A58T
TCGA-DM-A0XF
COAD
TCGA
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.1667
p.A58T
DO9258
COAD
ICGC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.1667
p.W49C
DO230311
COCA
ICGC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.5889
p.R51H
DO233011
GACA
ICGC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.7133
p.G36C
DO228974
LICA
ICGC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.25
p.V59L
DO229015
LICA
ICGC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.1389
p.F48L
SIDM00169
Head and Neck Carcinoma
GDSC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.587
p.F48L
SIDM01469
Pancreatic Carcinoma
GDSC
LAPSGTSVPFWVRM
DEG_ODPH_VHL_1
0.587
Drug responses associated with ICAM4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPSGTSVPFWVRM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14773
Intercellular adhesion molecule 4
DEG_ODPH_VHL_1
39:52
LAPSGTSVPFWVRM
VHL
0.8722
More...