DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LDIFED
Uniprot ID:
P98164
Source protein:
Low-density lipoprotein receptor-related protein 2
Source gene:
LRP2
Class:
LIG_APCC_ABBA_1
Location:
4277:4282
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6185
ASA_SCORE:
55.3167
COIL:
0.3635
CONS_SCORE:
0.6653
DSS_SCORE:
0.1296
HELIX:
0.0037
FCONS_SCORE:
1.3994
RIG_SCORE:
0.9293
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K4291N
TCGA-CM-5861
COAD
TCGA
LDIFED
LIG_APCC_ABBA_1
0.1944
p.K4291N
TCGA-ER-A19F
SKCM
TCGA
LDIFED
LIG_APCC_ABBA_1
0.1944
p.K4291N
DO7918
COAD
ICGC
LDIFED
LIG_APCC_ABBA_1
0.1944
p.K4291N
DO37679
SKCM
ICGC
LDIFED
LIG_APCC_ABBA_1
0.1944
p.W4286C
TCGA-E6-A1LX
UCEC
TCGA
LDIFED
LIG_APCC_ABBA_1
0.2222
p.W4286C
DO41020
UCEC
ICGC
LDIFED
LIG_APCC_ABBA_1
0.2222
p.L4284S
TCGA-EE-A3JD
SKCM
TCGA
LDIFED
LIG_APCC_ABBA_1
0.2778
p.L4284S
DO50299
SKCM
ICGC
LDIFED
LIG_APCC_ABBA_1
0.2778
p.K4289N
TCGA-ER-A19T
SKCM
TCGA
LDIFED
LIG_APCC_ABBA_1
0.25
p.K4289N
DO51251
SKCM
ICGC
LDIFED
LIG_APCC_ABBA_1
0.25
p.G4292E
TCGA-ER-A42L
SKCM
TCGA
LDIFED
LIG_APCC_ABBA_1
0.0556
p.G4292E
DO223910
SKCM
ICGC
LDIFED
LIG_APCC_ABBA_1
0.0556
p.E4290K
TCGA-FS-A1ZN
SKCM
TCGA
LDIFED
LIG_APCC_ABBA_1
0.1111
p.E4290K
DO38165
SKCM
ICGC
LDIFED
LIG_APCC_ABBA_1
0.1111
p.E4281Q
DO48414
BLCA
ICGC
LDIFED
LIG_APCC_ABBA_1
0.5633
p.Q4283K
DO234425
ESAD
ICGC
LDIFED
LIG_APCC_ABBA_1
0.3056
p.E4270K
SIDM01237
Hepatocellular Carcinoma
GDSC
LDIFED
LIG_APCC_ABBA_1
0.1389
p.E4270K
ACH-000739
Liver Cancer
CCLE
LDIFED
LIG_APCC_ABBA_1
0.1389
p.E4270K
ACH-001021
Liver Cancer
CCLE
LDIFED
LIG_APCC_ABBA_1
0.1389
p.E4270K
C3A
liver
COSMIC
LDIFED
LIG_APCC_ABBA_1
0.1389
p.K4291R
SIDM01045
Endometrial Carcinoma
GDSC
LDIFED
LIG_APCC_ABBA_1
0.1944
p.K4291R
ACH-000978
Endometrial/Uterine Cancer
CCLE
LDIFED
LIG_APCC_ABBA_1
0.1944
p.K4291R
EN
endometrium
COSMIC
LDIFED
LIG_APCC_ABBA_1
0.1944
Drug responses associated with LRP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LDIFED
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P98164
Low-density lipoprotein receptor-related protein 2
LIG_APCC_ABBA_1
4277:4282
LDIFED
APC,CDC20,FZR1
0.6185
More...