DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGEKTPLK
Uniprot ID:
Q9H898
Source protein:
Zinc finger matrin-type protein 4
Source gene:
ZMAT4
Class:
DEG_SCF_SKP2-CKS1_1
Location:
107:114
E3 ligase:
SKP2,CSK1
DEGRON score:
0.9843
ASA_SCORE:
106.6875
COIL:
0.8918
CONS_SCORE:
0.7365
DSS_SCORE:
0.4098
HELIX:
0.0923
FCONS_SCORE:
0.9646
RIG_SCORE:
0.7394
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P112S
TCGA-A5-A0G2
UCEC
TCGA
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.6752
p.P112S
DO41235
UCEC
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.6752
p.H99Y
TCGA-BF-A1Q0
SKCM
TCGA
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1111
p.H99Y
DO47374
SKCM
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1111
p.K124R
TCGA-BR-A4PD
STAD
TCGA
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1667
p.K124R
DO47831
STAD
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1667
p.T115I
TCGA-BS-A0UF
UCEC
TCGA
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.75
p.T115I
TCGA-DU-6392
LGG
TCGA
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.75
p.T115I
TCGA-ER-A194
SKCM
TCGA
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.75
p.T115I
DO22237
LGG
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.75
p.T115I
DO47646
SKCM
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.75
p.T115I
DO41488
UCEC
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.75
p.R120H
DO9876
COAD
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1667
p.L123R
DO50452
ESAD
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.0833
p.L123P
DO234245
ESAD
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.0833
p.K124T
DO234450
ESAD
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1667
p.T111N
DO229018
LICA
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.8166
p.R120S
DO229038
LICA
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1667
p.R120S
DO26468
LUSC
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.1667
p.G108R
DO50970
LICA
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.6457
p.P112Q
DO232224
PBCA
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.7035
p.K104I
DO229456
SKCA
ICGC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.3611
p.L106M
SIDM00751
Non-Small Cell Lung Carcinoma
GDSC
LGEKTPLK
DEG_SCF_SKP2-CKS1_1
0.3056
Drug responses associated with ZMAT4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGEKTPLK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9H898
Zinc finger matrin-type protein 4
DEG_SCF_SKP2-CKS1_1
107:114
LGEKTPLK
SKP2,CSK1
0.9843
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