DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGTPSPE
Uniprot ID:
Q12851
Source protein:
Mitogen-activated protein kinase kinase kinase kinase 2
Source gene:
MAP4K2
Class:
DEG_SCF_FBW7_2
Location:
294:300
E3 ligase:
FBXW7
DEGRON score:
0.9811
ASA_SCORE:
81.8143
COIL:
0.8804
CONS_SCORE:
0.3115
DSS_SCORE:
0.6349
HELIX:
0.09
FCONS_SCORE:
0.7108
RIG_SCORE:
0.6128
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G295W
TCGA-GN-A26C
SKCM
TCGA
LGTPSPE
DEG_SCF_FBW7_2
0.6714
p.G295W
DO37782
SKCM
ICGC
LGTPSPE
DEG_SCF_FBW7_2
0.6714
p.E300K
DO220882
MELA
ICGC
LGTPSPE
DEG_SCF_FBW7_2
0.7022
p.C302R
DO229232
THCA
ICGC
LGTPSPE
DEG_SCF_FBW7_2
0.2778
p.E305G
DO229232
THCA
ICGC
LGTPSPE
DEG_SCF_FBW7_2
0.1944
p.E303Q
SIDM01128
Small Cell Lung Carcinoma
GDSC
LGTPSPE
DEG_SCF_FBW7_2
0.25
p.E303Q
ACH-000767
Lung Cancer
CCLE
LGTPSPE
DEG_SCF_FBW7_2
0.25
p.E303Q
NCI-H526
lung
COSMIC
LGTPSPE
DEG_SCF_FBW7_2
0.25
p.P297A
ACH-001194
Kidney Cancer
CCLE
LGTPSPE
DEG_SCF_FBW7_2
0.7503
Drug responses associated with MAP4K2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
SIDM00951
LAML|acute_myeloid_leukaemia
p.S227L (No)
GDSC
NG-25
0.116
SIDM01004
LCML|chronic_myeloid_leukaemia
p.R317Q (No)
GDSC
NG-25
0.0133
SIDM00651
UNCLASSIFIED|lung_NSCLC_large_cell
p.Q269* (No)
GDSC
NG-25
23.9985
SIDM01007
ALL|lymphoblastic_leukemia
p.P212H (No)
GDSC
NG-25
0.7013
SIDM01174
CESC|cervix
p.K260N (No)
GDSC
NG-25
84.4059
SIDM00251
STAD|stomach
p.R484Q (No)
GDSC
NG-25
43.2331
SIDM00251
STAD|stomach
p.R279W (No)
GDSC
NG-25
43.2331
SIDM00516
SKCM|melanoma
p.P435S (No)
GDSC
NG-25
4.4617
SIDM01210
LGG|glioma
p.A339T (No)
GDSC
NG-25
20.2181
SIDM00946
ALL|T_cell_leukemia
p.L736P (No)
GDSC
NG-25
1.2783
SIDM00946
ALL|T_cell_leukemia
p.G321D (No)
GDSC
NG-25
1.2783
SIDM00217
COREAD|large_intestine
p.R786* (No)
GDSC
NG-25
10.2102
SIDM00217
COREAD|large_intestine
p.R451Q (No)
GDSC
NG-25
10.2102
SIDM00217
COREAD|large_intestine
p.F272L (No)
GDSC
NG-25
10.2102
SIDM00217
COREAD|large_intestine
p.C117Y (No)
GDSC
NG-25
10.2102
SIDM01128
SCLC|lung_small_cell_carcinoma
p.E303Q (Yes)
GDSC
NG-25
21.4992
SIDM00596
UCEC|endometrium
p.G597C (No)
GDSC
NG-25
91.3081
SIDM00928
BRCA|breast
p.R279W (No)
GDSC
NG-25
7.1494
SIDM00753
LUAD|lung_NSCLC_adenocarcinoma
p.Y76F (No)
GDSC
NG-25
151.6735
SIDM00545
SKCM|melanoma
p.P175L (No)
GDSC
NG-25
154.1976
SIDM00744
LUAD|lung_NSCLC_adenocarcinoma
p.G318R (No)
GDSC
NG-25
154.3287
SIDM00537
COREAD|large_intestine
p.R605Q (No)
GDSC
NG-25
6.5017
All proteins holding degron of LGTPSPE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q12851
Mitogen-activated protein kinase kinase kinase kinase 2
DEG_SCF_FBW7_2
294:300
LGTPSPE
FBXW7
0.9811
More...