DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LIPHPD
Uniprot ID:
O95398
Source protein:
Rap guanine nucleotide exchange factor 3
Source gene:
RAPGEF3
Class:
LIG_APCC_ABBA_1
Location:
641:646
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5091
ASA_SCORE:
71.4
COIL:
0.8152
CONS_SCORE:
0.4581
DSS_SCORE:
0.5321
HELIX:
0.0998
FCONS_SCORE:
0.9981
RIG_SCORE:
0.749
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L641P
TCGA-BC-A10R
LIHC
TCGA
LIPHPD
LIG_APCC_ABBA_1
0.7582
p.L641P
DO22962
LIHC
ICGC
LIPHPD
LIG_APCC_ABBA_1
0.7582
p.E640K
TCGA-KQ-A41O
BLCA
TCGA
LIPHPD
LIG_APCC_ABBA_1
0.3056
p.E640K
DO223589
BLCA
ICGC
LIPHPD
LIG_APCC_ABBA_1
0.3056
p.P650T
DO228976
LICA
ICGC
LIPHPD
LIG_APCC_ABBA_1
0.2222
p.N634H
DO229536
PRAD
ICGC
LIPHPD
LIG_APCC_ABBA_1
0.1389
p.R655Q
SNU-1040
large_intestine
COSMIC
LIPHPD
LIG_APCC_ABBA_1
0.0833
p.Y647C
NCI-H211
lung
COSMIC
LIPHPD
LIG_APCC_ABBA_1
0.3056
p.R640G
Jurkat
haematopoietic_and_lymphoid_tissue
COSMIC
LIPHPD
LIG_APCC_ABBA_1
0.3056
Drug responses associated with RAPGEF3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LIPHPD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95398
Rap guanine nucleotide exchange factor 3
LIG_APCC_ABBA_1
641:646
LIPHPD
APC,CDC20,FZR1
0.5091
More...