DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNPFSD
Uniprot ID:
Q13761
Source protein:
Runt-related transcription factor 3
Source gene:
RUNX3
Class:
LIG_APCC_ABBA_1
Location:
239:244
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9839
ASA_SCORE:
30.45
COIL:
0.8937
CONS_SCORE:
0.3542
DSS_SCORE:
0.7226
HELIX:
0.0328
FCONS_SCORE:
1.0483
RIG_SCORE:
0.662
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P246T
TCGA-BF-A1PZ
SKCM
TCGA
LNPFSD
LIG_APCC_ABBA_1
0.2778
p.P246T
DO50279
SKCM
ICGC
LNPFSD
LIG_APCC_ABBA_1
0.2778
p.Q244K
TCGA-CN-6010
HNSC
TCGA
LNPFSD
LIG_APCC_ABBA_1
0.6944
p.Q244K
DO14766
HNSC
ICGC
LNPFSD
LIG_APCC_ABBA_1
0.6944
p.P246Q
TCGA-DA-A1I1
SKCM
TCGA
LNPFSD
LIG_APCC_ABBA_1
0.2778
p.P246Q
DO37966
SKCM
ICGC
LNPFSD
LIG_APCC_ABBA_1
0.2778
p.S237R
DO229038
LICA
ICGC
LNPFSD
LIG_APCC_ABBA_1
0.2778
p.S237R
DO229272
THCA
ICGC
LNPFSD
LIG_APCC_ABBA_1
0.2778
p.R230Q
DO48899
PBCA
ICGC
LNPFSD
LIG_APCC_ABBA_1
0.0833
p.S234G
DO229268
THCA
ICGC
LNPFSD
LIG_APCC_ABBA_1
0.1944
p.F239L
SIDM00428
Acute Myeloid Leukemia
GDSC
LNPFSD
LIG_APCC_ABBA_1
0.6981
p.F239L
ACH-000294
Leukemia
CCLE
LNPFSD
LIG_APCC_ABBA_1
0.6981
p.F239L
NB-4
haematopoietic_and_lymphoid_tissue
COSMIC
LNPFSD
LIG_APCC_ABBA_1
0.6981
p.P243A
SIDM00845
Burkitt's Lymphoma
GDSC
LNPFSD
LIG_APCC_ABBA_1
0.7503
p.T235P
ACH-001307
Thyroid Cancer
CCLE
LNPFSD
LIG_APCC_ABBA_1
0.2222
Drug responses associated with RUNX3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LNPFSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13761
Runt-related transcription factor 3
LIG_APCC_ABBA_1
239:244
LNPFSD
APC,CDC20,FZR1
0.9839
More...