DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNVYGD
Uniprot ID:
Q92643
Source protein:
GPI-anchor transamidase
Source gene:
PIGK
Class:
LIG_APCC_ABBA_1
Location:
110:115
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6614
ASA_SCORE:
54.6167
COIL:
0.6262
CONS_SCORE:
0.6025
DSS_SCORE:
0.2362
HELIX:
0.1967
FCONS_SCORE:
1.3518
RIG_SCORE:
0.7879
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N111I
DO230974
LUSC
ICGC
LNVYGD
LIG_APCC_ABBA_1
0.6169
p.N111I
DO224632
LUSC
ICGC
LNVYGD
LIG_APCC_ABBA_1
0.6169
p.E118D
TCGA-AX-A0J0
UCEC
TCGA
LNVYGD
LIG_APCC_ABBA_1
0.25
p.E118D
DO41133
UCEC
ICGC
LNVYGD
LIG_APCC_ABBA_1
0.25
p.V102L
TCGA-06-5416
GBM
TCGA
LNVYGD
LIG_APCC_ABBA_1
0.1111
p.V102L
DO10880
GBM
ICGC
LNVYGD
LIG_APCC_ABBA_1
0.1111
p.E125K
SIDM00955
Melanoma
GDSC
LNVYGD
LIG_APCC_ABBA_1
0.0556
p.E125K
ACH-000812
Skin Cancer
CCLE
LNVYGD
LIG_APCC_ABBA_1
0.0556
p.E125K
ACH-001001
Bone Cancer
CCLE
LNVYGD
LIG_APCC_ABBA_1
0.0556
p.E125K
COLO-783
skin
COSMIC
LNVYGD
LIG_APCC_ABBA_1
0.0556
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Drug responses associated with PIGK mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LNVYGD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q92643
GPI-anchor transamidase
LIG_APCC_ABBA_1
110:115
LNVYGD
APC,CDC20,FZR1
0.6614
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