DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LPPFSE
Uniprot ID:
Q5JUK2
Source protein:
Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1
Source gene:
SOHLH1
Class:
LIG_APCC_ABBA_1
Location:
216:221
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9885
ASA_SCORE:
79.1667
COIL:
0.9072
CONS_SCORE:
0.5306
DSS_SCORE:
0.3317
HELIX:
0.0288
FCONS_SCORE:
1.2049
RIG_SCORE:
0.6573
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q211H
TCGA-AJ-A3BG
UCEC
TCGA
LPPFSE
LIG_APCC_ABBA_1
0.1944
p.Q211H
DO42633
UCEC
ICGC
LPPFSE
LIG_APCC_ABBA_1
0.1944
p.V212L
TCGA-EJ-7786
PRAD
TCGA
LPPFSE
LIG_APCC_ABBA_1
0.2222
p.V212L
DO36288
PRAD
ICGC
LPPFSE
LIG_APCC_ABBA_1
0.2222
p.P217R
DO233283
GACA
ICGC
LPPFSE
LIG_APCC_ABBA_1
0.6401
p.C210G
DO218863
SKCA
ICGC
LPPFSE
LIG_APCC_ABBA_1
0.1667
p.R213Q
SIDM00731
Small Cell Lung Carcinoma
GDSC
LPPFSE
LIG_APCC_ABBA_1
0.25
p.R213Q
NCI-H2196
lung
COSMIC
LPPFSE
LIG_APCC_ABBA_1
0.25
p.P229S
ACH-001610
Brain Cancer
CCLE
LPPFSE
LIG_APCC_ABBA_1
0.1111
Drug responses associated with SOHLH1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPPFSE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5JUK2
Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1
LIG_APCC_ABBA_1
216:221
LPPFSE
APC,CDC20,FZR1
0.9885
More...