DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRGNLKQVR
Uniprot ID:
Q8WXF1
Source protein:
Paraspeckle component 1
Source gene:
PSPC1
Class:
DEG_APCC_DBOX_1
Location:
3:11
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8854
ASA_SCORE:
69.1889
COIL:
0.5219
CONS_SCORE:
0.4058
DSS_SCORE:
0.5844
HELIX:
0.0038
FCONS_SCORE:
1.1519
RIG_SCORE:
0.7926
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R20C
TCGA-52-7809
LUSC
TCGA
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
TCGA-FD-A5BX
BLCA
TCGA
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
DO44079
BLCA
ICGC
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
DO26746
LUSC
ICGC
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
SIDM00796
Head and Neck Carcinoma
GDSC
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
SIDM01108
Non-Small Cell Lung Carcinoma
GDSC
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
ACH-000309
Lung Cancer
CCLE
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
ACH-000740
Head and Neck Cancer
CCLE
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
SK-LU-1
lung
COSMIC
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.R20C
A253
salivary_gland
COSMIC
LRGNLKQVR
DEG_APCC_DBOX_1
0.0833
p.N6H
TCGA-BR-8680
STAD
TCGA
LRGNLKQVR
DEG_APCC_DBOX_1
0.6312
p.N6H
DO47769
STAD
ICGC
LRGNLKQVR
DEG_APCC_DBOX_1
0.6312
p.R11S
DO44848
LICA
ICGC
LRGNLKQVR
DEG_APCC_DBOX_1
0.6316
p.N15T
DO229462
SKCA
ICGC
LRGNLKQVR
DEG_APCC_DBOX_1
0.2222
p.V10A
SIDM01609
Endometrial Carcinoma
GDSC
LRGNLKQVR
DEG_APCC_DBOX_1
0.6936
p.V10A
ACH-000972
Endometrial/Uterine Cancer
CCLE
LRGNLKQVR
DEG_APCC_DBOX_1
0.6936
Drug responses associated with PSPC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRGNLKQVR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8WXF1
Paraspeckle component 1
DEG_APCC_DBOX_1
3:11
LRGNLKQVR
APC,CDC20,FZR1
0.8854
More...