DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRPFTE
Uniprot ID:
O95477
Source protein:
Phospholipid-transporting ATPase ABCA1
Source gene:
ABCA1
Class:
LIG_APCC_ABBA_1
Location:
1282:1287
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7697
ASA_SCORE:
88.4
COIL:
0.844
CONS_SCORE:
0.2478
DSS_SCORE:
0.627
HELIX:
0.0565
FCONS_SCORE:
0.973
RIG_SCORE:
0.7087
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D1288Y
TCGA-33-4566
LUSC
TCGA
LRPFTE
LIG_APCC_ABBA_1
0.3056
p.D1288Y
DO26790
LUSC
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.3056
p.D1295Y
TCGA-D1-A103
UCEC
TCGA
LRPFTE
LIG_APCC_ABBA_1
0.1111
p.D1295Y
DO42312
UCEC
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.1111
p.G1276R
TCGA-EO-A22R
UCEC
TCGA
LRPFTE
LIG_APCC_ABBA_1
0.1667
p.G1276R
DO42713
UCEC
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.1667
p.G1276R
ACH-001610
Brain Cancer
CCLE
LRPFTE
LIG_APCC_ABBA_1
0.1667
p.R1283C
TCGA-RS-A6TO
HNSC
TCGA
LRPFTE
LIG_APCC_ABBA_1
0.719
p.R1283C
DO219060
HNSC
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.719
p.R1283H
DO222501
COCA
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.7133
p.L1282I
DO228976
LICA
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.6063
p.Q1279K
DO229027
LICA
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.25
p.D1277G
DO229485
SKCA
ICGC
LRPFTE
LIG_APCC_ABBA_1
0.1944
p.D1289N
SIDM00383
Gastric Carcinoma
GDSC
LRPFTE
LIG_APCC_ABBA_1
0.2778
p.D1289N
SIDM00240
Cervical Carcinoma
GDSC
LRPFTE
LIG_APCC_ABBA_1
0.2778
p.D1289N
ACH-002021
Endometrial/Uterine Cancer
CCLE
LRPFTE
LIG_APCC_ABBA_1
0.2778
p.D1289N
ACH-002180
Cervical Cancer
CCLE
LRPFTE
LIG_APCC_ABBA_1
0.2778
p.D1289N
ACH-002198
Gastric Cancer
CCLE
LRPFTE
LIG_APCC_ABBA_1
0.2778
p.D1289N
SCH
stomach
COSMIC
LRPFTE
LIG_APCC_ABBA_1
0.2778
p.D1289N
OMC-1
cervix
COSMIC
LRPFTE
LIG_APCC_ABBA_1
0.2778
Drug responses associated with ABCA1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRPFTE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95477
Phospholipid-transporting ATPase ABCA1
LIG_APCC_ABBA_1
1282:1287
LRPFTE
APC,CDC20,FZR1
0.7697
More...