DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LSVYPD
Uniprot ID:
Q8IYE1
Source protein:
Coiled-coil domain-containing protein 13
Source gene:
CCDC13
Class:
LIG_APCC_ABBA_1
Location:
298:303
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9881
ASA_SCORE:
90.3
COIL:
0.831
CONS_SCORE:
0.3624
DSS_SCORE:
0.554
HELIX:
0.1417
FCONS_SCORE:
1.1097
RIG_SCORE:
0.7056
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S308L
TCGA-A5-A0G1
UCEC
TCGA
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
DO42472
UCEC
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM00075
Non-Cancerous
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM00242
Osteosarcoma
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM00397
Acute Myeloid Leukemia
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM00554
Ovarian Carcinoma
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM01033
Bladder Carcinoma
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM00171
Colorectal Carcinoma
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM01694
B-Lymphoblastic Leukemia
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S308L
SIDM01473
Plasma Cell Myeloma
GDSC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.S290T
DO222817
BTCA
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.1111
p.A291S
DO223359
CLLE
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.1389
p.P304Q
DO233168
GACA
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.3056
p.P304Q
DO228976
LICA
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.3056
p.T293K
DO228939
LICA
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.1944
p.Q310K
DO229029
LICA
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.1389
p.P304L
DO232761
PBCA
ICGC
LSVYPD
LIG_APCC_ABBA_1
0.3056
Drug responses associated with CCDC13 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LSVYPD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IYE1
Coiled-coil domain-containing protein 13
LIG_APCC_ABBA_1
298:303
LSVYPD
APC,CDC20,FZR1
0.9881
More...