DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPRME
Uniprot ID:
Q76KP1
Source protein:
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1
Source gene:
B4GALNT4
Class:
DEG_SCF_FBW7_2
Location:
328:333
E3 ligase:
FBXW7
DEGRON score:
0.9752
ASA_SCORE:
47.7333
COIL:
0.7102
CONS_SCORE:
0.3952
DSS_SCORE:
0.4734
HELIX:
0.0442
FCONS_SCORE:
0.9012
RIG_SCORE:
0.7549
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N339S
TCGA-5M-AAT6
COAD
TCGA
LTPRME
DEG_SCF_FBW7_2
0.1667
p.N339S
DO223703
COAD
ICGC
LTPRME
DEG_SCF_FBW7_2
0.1667
p.N339S
DO218900
SKCA
ICGC
LTPRME
DEG_SCF_FBW7_2
0.1667
p.L341M
TCGA-AP-A059
UCEC
TCGA
LTPRME
DEG_SCF_FBW7_2
0.1111
p.L341M
DO41361
UCEC
ICGC
LTPRME
DEG_SCF_FBW7_2
0.1111
p.D324G
TCGA-BH-A18G
BRCA
TCGA
LTPRME
DEG_SCF_FBW7_2
0.2222
p.D324G
DO3686
BRCA
ICGC
LTPRME
DEG_SCF_FBW7_2
0.2222
p.E338D
TCGA-IB-7651
PAAD
TCGA
LTPRME
DEG_SCF_FBW7_2
0.1944
p.E338D
DO46657
PAAD
ICGC
LTPRME
DEG_SCF_FBW7_2
0.1944
p.L337Q
DO231992
LICA
ICGC
LTPRME
DEG_SCF_FBW7_2
0.2222
p.S334F
DO229177
LMS
ICGC
LTPRME
DEG_SCF_FBW7_2
0.3056
p.P322S
DO222653
MELA
ICGC
LTPRME
DEG_SCF_FBW7_2
0.1667
p.P322S
DO38129
SKCM
ICGC
LTPRME
DEG_SCF_FBW7_2
0.1667
Drug responses associated with B4GALNT4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPRME
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q76KP1
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1
DEG_SCF_FBW7_2
328:333
LTPRME
FBXW7
0.9752
More...