DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PRVSLERLD
Uniprot ID:
Q13263
Source protein:
Transcription intermediary factor 1-beta
Source gene:
TRIM28
Class:
DEG_APCC_DBOX_1
Location:
486:494
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8498
ASA_SCORE:
87.4444
COIL:
0.6548
CONS_SCORE:
0.2825
DSS_SCORE:
0.3559
HELIX:
0.2198
FCONS_SCORE:
0.6706
RIG_SCORE:
0.8081
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D496N
TCGA-2W-A8YY
CESC
TCGA
PRVSLERLD
DEG_APCC_DBOX_1
0.2778
p.D496N
DO223732
CESC
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.2778
p.G480S
TCGA-B5-A3FC
UCEC
TCGA
PRVSLERLD
DEG_APCC_DBOX_1
0.1667
p.G480S
DO41871
UCEC
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.1667
p.R483H
TCGA-B5-A3FC
UCEC
TCGA
PRVSLERLD
DEG_APCC_DBOX_1
0.25
p.R483H
DO232761
PBCA
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.25
p.R483H
DO41871
UCEC
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.25
p.R492C
TCGA-D3-A1Q1
SKCM
TCGA
PRVSLERLD
DEG_APCC_DBOX_1
0.719
p.R492C
DO37445
SKCM
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.719
p.R492C
SIDM00403
T-Lymphoblastic Leukemia
GDSC
PRVSLERLD
DEG_APCC_DBOX_1
0.719
p.R492C
ACH-000636
Leukemia
CCLE
PRVSLERLD
DEG_APCC_DBOX_1
0.719
p.R492C
RPMI-8402
haematopoietic_and_lymphoid_tissue
COSMIC
PRVSLERLD
DEG_APCC_DBOX_1
0.719
p.E491D
TCGA-KK-A8IC
PRAD
TCGA
PRVSLERLD
DEG_APCC_DBOX_1
0.5647
p.E501K
DO457
BLCA
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.5833
p.G476S
DO233140
GACA
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.0556
p.P503A
DO27349
LUSC
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.0833
p.E501D
DO42673
UCEC
ICGC
PRVSLERLD
DEG_APCC_DBOX_1
0.5833
p.Q502H
SIDM01051
Ovarian Carcinoma
GDSC
PRVSLERLD
DEG_APCC_DBOX_1
0.1111
p.Q502H
ACH-000936
Ovarian Cancer
CCLE
PRVSLERLD
DEG_APCC_DBOX_1
0.1111
p.Q502H
EFO-27
ovary
COSMIC
PRVSLERLD
DEG_APCC_DBOX_1
0.1111
Drug responses associated with TRIM28 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PRVSLERLD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13263
Transcription intermediary factor 1-beta
DEG_APCC_DBOX_1
486:494
PRVSLERLD
APC,CDC20,FZR1
0.8498
More...