DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPTYS
Uniprot ID:
P98164
Source protein:
Low-density lipoprotein receptor-related protein 2
Source gene:
LRP2
Class:
DEG_SCF_FBW7_1
Location:
4631:4636
E3 ligase:
FBXW7
DEGRON score:
0.9379
ASA_SCORE:
84.9167
COIL:
0.93
CONS_SCORE:
0.3753
DSS_SCORE:
0.7448
HELIX:
0.031
FCONS_SCORE:
0.9093
RIG_SCORE:
0.6048
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P4633L
DO27943
ORCA
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.7582
p.S4627L
TCGA-EO-A22X
UCEC
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
TCGA-FR-A726
SKCM
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
TCGA-VR-A8EO
ESCA
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
DO48665
SKCM
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
DO43907
UCEC
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.T4641S
SIDM00048
Non-Small Cell Lung Carcinoma
GDSC
PTPTYS
DEG_SCF_FBW7_1
0.6389
p.T4641S
SIDM00954
Breast Carcinoma
GDSC
PTPTYS
DEG_SCF_FBW7_1
0.6389
p.R4629T
TCGA-85-8048
LUSC
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.2778
p.R4629T
DO27389
LUSC
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.2778
p.P4625L
DO220886
MELA
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.1667
p.A4646T
TCGA-66-2755
LUSC
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.0556
p.A4646T
DO27365
LUSC
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.0556
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Drug responses associated with LRP2 mutations
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Cancer
Mutation (In Degron?)
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All proteins holding degron of PTPTYS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P98164
Low-density lipoprotein receptor-related protein 2
DEG_SCF_FBW7_1
4631:4636
PTPTYS
FBXW7
0.9379
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