DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPTYS
Uniprot ID:
P98164
Source protein:
Low-density lipoprotein receptor-related protein 2
Source gene:
LRP2
Class:
DEG_SCF_FBW7_1
Location:
4631:4636
E3 ligase:
FBXW7
DEGRON score:
0.9379
ASA_SCORE:
84.9167
COIL:
0.93
CONS_SCORE:
0.3753
DSS_SCORE:
0.7448
HELIX:
0.031
FCONS_SCORE:
0.9093
RIG_SCORE:
0.6048
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A4646T
TCGA-66-2755
LUSC
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.0556
p.A4646T
DO27365
LUSC
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.0556
p.R4629T
TCGA-85-8048
LUSC
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.2778
p.R4629T
DO27389
LUSC
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.2778
p.S4627L
TCGA-EO-A22X
UCEC
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
TCGA-FR-A726
SKCM
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
TCGA-VR-A8EO
ESCA
TCGA
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
DO48665
SKCM
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.S4627L
DO43907
UCEC
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.6667
p.P4625L
DO220886
MELA
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.1667
p.P4633L
DO27943
ORCA
ICGC
PTPTYS
DEG_SCF_FBW7_1
0.7582
p.T4641S
SIDM00048
Non-Small Cell Lung Carcinoma
GDSC
PTPTYS
DEG_SCF_FBW7_1
0.6389
p.T4641S
SIDM00954
Breast Carcinoma
GDSC
PTPTYS
DEG_SCF_FBW7_1
0.6389
Drug responses associated with LRP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPTYS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P98164
Low-density lipoprotein receptor-related protein 2
DEG_SCF_FBW7_1
4631:4636
PTPTYS
FBXW7
0.9379
More...