DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RDPVYDE
Uniprot ID:
Q13426
Source protein:
DNA repair protein XRCC4
Source gene:
XRCC4
Class:
LIG_APCC_ABBAyCdc20_2
Location:
225:231
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.99
ASA_SCORE:
111.2714
COIL:
0.8604
CONS_SCORE:
0.5743
DSS_SCORE:
0.7137
HELIX:
0.118
FCONS_SCORE:
1.0215
RIG_SCORE:
0.7183
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R225Q
TCGA-4Z-AA87
BLCA
TCGA
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.7329
p.R225Q
DO218990
BLCA
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.7329
p.E235D
TCGA-BF-A1PU
SKCM
TCGA
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.2222
p.E235D
DO50278
SKCM
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.2222
p.E220Q
TCGA-BH-A0W7
BRCA
TCGA
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.1944
p.E220Q
DO1272
BRCA
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.1944
p.D230N
TCGA-E9-A1NA
BRCA
TCGA
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.5821
p.D230N
DO1522
BRCA
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.5821
p.D230N
DO222682
BTCA
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.5821
p.D230N
SIDM01776
Plasma Cell Myeloma
GDSC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.5821
p.D230N
ACH-001162
Myeloma
CCLE
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.5821
p.R225L
TCGA-EE-A183
SKCM
TCGA
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.8428
p.R225L
DO37715
SKCM
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.8428
p.E231K
TCGA-GC-A4ZW
BLCA
TCGA
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.7022
p.E231K
DO219024
BLCA
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.7022
p.M221I
DO225349
BRCA
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.2222
p.D224Y
DO229024
LICA
ICGC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.3056
p.T215I
SIDM02021
Esophageal Carcinoma
GDSC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.0556
p.S219F
SIDM00923
Cervical Carcinoma
GDSC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.1667
p.S219F
ACH-001336
Cervical Cancer
CCLE
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.1667
p.S219F
Ca-Ski
cervix
COSMIC
RDPVYDE
LIG_APCC_ABBAyCdc20_2
0.1667
Drug responses associated with XRCC4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RDPVYDE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13426
DNA repair protein XRCC4
LIG_APCC_ABBAyCdc20_2
225:231
RDPVYDE
APC,CDC20,FZR1
0.99
More...