DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SQKEPSEVPTP
Uniprot ID:
P17096
Source protein:
High mobility group protein HMG-I/HMG-Y
Source gene:
HMGA1
Class:
DEG_COP1_1
Location:
44:54
E3 ligase:
COP1
DEGRON score:
0.9909
ASA_SCORE:
102.8727
COIL:
0.9485
CONS_SCORE:
1
DSS_SCORE:
0.8419
HELIX:
0.019
FCONS_SCORE:
1.0121
RIG_SCORE:
0.5804
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A40T
TCGA-AD-5900
COAD
TCGA
SQKEPSEVPTP
DEG_COP1_1
0.2222
p.A40T
DO8514
COAD
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.2222
p.R58W
TCGA-CG-4306
STAD
TCGA
SQKEPSEVPTP
DEG_COP1_1
0.2222
p.R58W
DO38567
STAD
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.2222
p.K55N
TCGA-Q1-A73P
CESC
TCGA
SQKEPSEVPTP
DEG_COP1_1
0.75
p.K55N
DO49983
CESC
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.75
p.G59V
DO233693
GACA
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.1944
p.Q45H
DO228948
LICA
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.647
p.E50K
DO228142
PBCA
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.591
p.P48S
DO229250
THCA
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.5641
p.A40V
DO41199
UCEC
ICGC
SQKEPSEVPTP
DEG_COP1_1
0.2222
p.A59D
LNCaP-Clone-FGC
prostate
COSMIC
SQKEPSEVPTP
DEG_COP1_1
0.1944
Drug responses associated with HMGA1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SQKEPSEVPTP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P17096
High mobility group protein HMG-I/HMG-Y
DEG_COP1_1
44:54
SQKEPSEVPTP
COP1
0.9909
More...