DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VAFTPEGE
Uniprot ID:
P11021
Source protein:
Endoplasmic reticulum chaperone BiP
Source gene:
HSPA5
Class:
DEG_SCF_FBW7_2
Location:
66:73
E3 ligase:
FBXW7
DEGRON score:
0.9327
ASA_SCORE:
45.7
COIL:
0.4134
CONS_SCORE:
0.6933
DSS_SCORE:
0.3743
HELIX:
0.006
FCONS_SCORE:
0.8398
RIG_SCORE:
0.7871
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T69P
ACH-000354
Pancreatic Cancer
CCLE
VAFTPEGE
DEG_SCF_FBW7_2
0.8142
p.T69P
CAPAN-1
pancreas
COSMIC
VAFTPEGE
DEG_SCF_FBW7_2
0.8142
p.P70T
TCGA-DD-A4NP
LIHC
TCGA
VAFTPEGE
DEG_SCF_FBW7_2
0.7031
p.P70T
DO44958
LIHC
ICGC
VAFTPEGE
DEG_SCF_FBW7_2
0.7031
p.G72V
TCGA-EE-A2GH
SKCM
TCGA
VAFTPEGE
DEG_SCF_FBW7_2
0.6421
p.G72V
DO37643
SKCM
ICGC
VAFTPEGE
DEG_SCF_FBW7_2
0.6421
p.A67T
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
VAFTPEGE
DEG_SCF_FBW7_2
0.6028
p.E71K
TCGA-AC-A2B8
BRCA
TCGA
VAFTPEGE
DEG_SCF_FBW7_2
0.591
p.E71K
DO5884
BRCA
ICGC
VAFTPEGE
DEG_SCF_FBW7_2
0.591
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Drug responses associated with HSPA5 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VAFTPEGE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P11021
Endoplasmic reticulum chaperone BiP
DEG_SCF_FBW7_2
66:73
VAFTPEGE
FBXW7
0.9327
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