DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VGIFVD
Uniprot ID:
O15553
Source protein:
Pyrin
Source gene:
MEFV
Class:
LIG_APCC_ABBA_1
Location:
718:723
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7077
ASA_SCORE:
8.2667
COIL:
0.0383
CONS_SCORE:
0.586
DSS_SCORE:
0.0818
HELIX:
0.002
FCONS_SCORE:
1.3116
RIG_SCORE:
0.8992
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G719V
TCGA-A8-A07U
BRCA
TCGA
VGIFVD
LIG_APCC_ABBA_1
0.6421
p.G727A
TCGA-DK-A1AC
BLCA
TCGA
VGIFVD
LIG_APCC_ABBA_1
0.2222
p.S730F
TCGA-FW-A3R5
SKCM
TCGA
VGIFVD
LIG_APCC_ABBA_1
0.1389
p.D723N
TCGA-GF-A3OT
SKCM
TCGA
VGIFVD
LIG_APCC_ABBA_1
0.6932
p.R708C
SIDM00461
Acute Myeloid Leukemia
GDSC
VGIFVD
LIG_APCC_ABBA_1
0.0556
p.R708C
OCI-AML5
haematopoietic_and_lymphoid_tissue
COSMIC
VGIFVD
LIG_APCC_ABBA_1
0.0556
p.V726A
SIDM01120
Other Solid Cancers
GDSC
VGIFVD
LIG_APCC_ABBA_1
0.25
p.V726A
SIDM00941
Kidney Carcinoma
GDSC
VGIFVD
LIG_APCC_ABBA_1
0.25
p.V726A
SIDM00140
Melanoma
GDSC
VGIFVD
LIG_APCC_ABBA_1
0.25
p.F721Y
SIDM00893
Breast Carcinoma
GDSC
VGIFVD
LIG_APCC_ABBA_1
0.6417
p.F721Y
BT-20
breast
COSMIC
VGIFVD
LIG_APCC_ABBA_1
0.6417
p.D723E
ACH-000681
Lung Cancer
CCLE
VGIFVD
LIG_APCC_ABBA_1
0.5647
Drug responses associated with MEFV mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGIFVD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15553
Pyrin
LIG_APCC_ABBA_1
718:723
VGIFVD
APC,CDC20,FZR1
0.7077
More...