DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VNLYRD
Uniprot ID:
Q969J2
Source protein:
Zinc finger protein with KRAB and SCAN domains 4
Source gene:
ZKSCAN4
Class:
LIG_APCC_ABBA_1
Location:
242:247
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6605
ASA_SCORE:
98.35
COIL:
0.4805
CONS_SCORE:
0.6774
DSS_SCORE:
0.4879
HELIX:
0.464
FCONS_SCORE:
1.0182
RIG_SCORE:
0.7832
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.H253Q
TCGA-22-5471
LUSC
TCGA
VNLYRD
LIG_APCC_ABBA_1
0.1667
p.D247Y
TCGA-36-2552
OV
TCGA
VNLYRD
LIG_APCC_ABBA_1
0.7325
p.S240C
TCGA-55-8085
LUAD
TCGA
VNLYRD
LIG_APCC_ABBA_1
0.2778
p.T242I
DO220894
MELA
ICGC
VNLYRD
LIG_APCC_ABBA_1
0.7078
p.R241I
DO43907
UCEC
ICGC
VNLYRD
LIG_APCC_ABBA_1
0.3056
p.Y245C
SIDM00358
Gastric Carcinoma
GDSC
VNLYRD
LIG_APCC_ABBA_1
0.7087
p.Y245C
ACH-000144
Gastric Cancer
CCLE
VNLYRD
LIG_APCC_ABBA_1
0.7087
Drug responses associated with ZKSCAN4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNLYRD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q969J2
Zinc finger protein with KRAB and SCAN domains 4
LIG_APCC_ABBA_1
242:247
VNLYRD
APC,CDC20,FZR1
0.6605
More...