DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VPVHFD
Uniprot ID:
P34096
Source protein:
Ribonuclease 4
Source gene:
RNASE4
Class:
LIG_APCC_ABBA_1
Location:
141:146
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8005
ASA_SCORE:
62.8833
COIL:
0.5462
CONS_SCORE:
0.6927
DSS_SCORE:
0.6641
HELIX:
0.0097
FCONS_SCORE:
1.0833
RIG_SCORE:
0.7798
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G147D
TCGA-FR-A3YO
SKCM
TCGA
VPVHFD
LIG_APCC_ABBA_1
0.3056
p.G147D
DO37419
SKCM
ICGC
VPVHFD
LIG_APCC_ABBA_1
0.3056
p.G137C
TCGA-EO-A3AZ
UCEC
TCGA
VPVHFD
LIG_APCC_ABBA_1
0.2222
p.G137C
DO50078
UCEC
ICGC
VPVHFD
LIG_APCC_ABBA_1
0.2222
p.V131I
TCGA-AA-3672
COAD
TCGA
VPVHFD
LIG_APCC_ABBA_1
0.0556
p.V131I
DO9010
COAD
ICGC
VPVHFD
LIG_APCC_ABBA_1
0.0556
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Drug responses associated with RNASE4 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VPVHFD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P34096
Ribonuclease 4
LIG_APCC_ABBA_1
141:146
VPVHFD
APC,CDC20,FZR1
0.8005
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