DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VQPFSD
Uniprot ID:
O00458
Source protein:
Interferon-related developmental regulator 1
Source gene:
IFRD1
Class:
LIG_APCC_ABBA_1
Location:
38:43
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8639
ASA_SCORE:
88.9167
COIL:
0.864
CONS_SCORE:
0.3842
DSS_SCORE:
0.6627
HELIX:
0.0958
FCONS_SCORE:
1.1375
RIG_SCORE:
0.7165
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D39H
DO223079
ESCA
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.7688
p.L40I
DO37794
SKCM
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.7174
p.Q39H
DO229019
LICA
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.647
p.V38F
DO229029
LICA
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.5957
p.N37H
TCGA-SL-A6J9
UCEC
TCGA
VQPFSD
LIG_APCC_ABBA_1
0.3056
p.N37H
DO219786
UCEC
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.3056
p.K44N
DO228506
BRCA
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.3056
p.N37T
SIDM02010
Esophageal Carcinoma
GDSC
VQPFSD
LIG_APCC_ABBA_1
0.3056
p.R36Q
TCGA-AA-3851
COAD
TCGA
VQPFSD
LIG_APCC_ABBA_1
0.2778
p.R36Q
TCGA-AX-A2HC
UCEC
TCGA
VQPFSD
LIG_APCC_ABBA_1
0.2778
p.R36Q
DO9972
COAD
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.2778
p.R36Q
DO41572
UCEC
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.2778
p.S45I
DO37452
SKCM
ICGC
VQPFSD
LIG_APCC_ABBA_1
0.2778
p.G33S
TCGA-IB-7651
PAAD
TCGA
VQPFSD
LIG_APCC_ABBA_1
0.1944
p.S52C
TCGA-IB-7651
PAAD
TCGA
VQPFSD
LIG_APCC_ABBA_1
0.0833
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Drug responses associated with IFRD1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VQPFSD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00458
Interferon-related developmental regulator 1
LIG_APCC_ABBA_1
38:43
VQPFSD
APC,CDC20,FZR1
0.8639
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