DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VRDLLNGVK
Uniprot ID:
Q96Q11
Source protein:
CCA tRNA nucleotidyltransferase 1, mitochondrial
Source gene:
TRNT1
Class:
DEG_APCC_DBOX_1
Location:
66:74
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6487
ASA_SCORE:
36.6778
COIL:
0.4267
CONS_SCORE:
0.6748
DSS_SCORE:
0.2634
HELIX:
0.5654
FCONS_SCORE:
1.2057
RIG_SCORE:
0.7808
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A84V
TCGA-B5-A11Y
UCEC
TCGA
VRDLLNGVK
DEG_APCC_DBOX_1
0.0556
p.A84V
DO40889
UCEC
ICGC
VRDLLNGVK
DEG_APCC_DBOX_1
0.0556
p.T83A
TCGA-DF-A2KN
UCEC
TCGA
VRDLLNGVK
DEG_APCC_DBOX_1
0.0833
p.T83A
DO223282
UCEC
ICGC
VRDLLNGVK
DEG_APCC_DBOX_1
0.0833
p.E58K
TCGA-DF-A2KU
UCEC
TCGA
VRDLLNGVK
DEG_APCC_DBOX_1
0.1111
p.E58K
DO223286
UCEC
ICGC
VRDLLNGVK
DEG_APCC_DBOX_1
0.1111
p.E58K
SIDM01588
Endometrial Carcinoma
GDSC
VRDLLNGVK
DEG_APCC_DBOX_1
0.1111
p.E58K
ACH-000597
Rhabdoid
CCLE
VRDLLNGVK
DEG_APCC_DBOX_1
0.1111
p.E58K
ACH-000993
Endometrial/Uterine Cancer
CCLE
VRDLLNGVK
DEG_APCC_DBOX_1
0.1111
p.E58K
ACH-001200
Rhabdoid
CCLE
VRDLLNGVK
DEG_APCC_DBOX_1
0.1111
p.R60G
SIDM00602
Gastric Carcinoma
GDSC
VRDLLNGVK
DEG_APCC_DBOX_1
0.1667
p.R60G
ACH-000919
Gastric Cancer
CCLE
VRDLLNGVK
DEG_APCC_DBOX_1
0.1667
p.R60G
IM-95
stomach
COSMIC
VRDLLNGVK
DEG_APCC_DBOX_1
0.1667
p.R67M
SIDM01608
Endometrial Carcinoma
GDSC
VRDLLNGVK
DEG_APCC_DBOX_1
0.8632
p.R67M
ACH-000990
Endometrial/Uterine Cancer
CCLE
VRDLLNGVK
DEG_APCC_DBOX_1
0.8632
Drug responses associated with TRNT1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRDLLNGVK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96Q11
CCA tRNA nucleotidyltransferase 1, mitochondrial
DEG_APCC_DBOX_1
66:74
VRDLLNGVK
APC,CDC20,FZR1
0.6487
More...