DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
VTPALS
Uniprot ID:
Q9C0E8
Source protein:
Endoplasmic reticulum junction formation protein lunapark
Source gene:
LNPK
Class:
DEG_SCF_FBW7_1
Location:
212:217
E3 ligase:
FBXW7
DEGRON score:
0.9971
ASA_SCORE:
81.95
COIL:
0.9363
CONS_SCORE:
0.3348
DSS_SCORE:
0.6933
HELIX:
0.03
FCONS_SCORE:
1.0097
RIG_SCORE:
0.6759
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E209K
SIDM00899
Pancreatic Carcinoma
GDSC
VTPALS
DEG_SCF_FBW7_1
0.25
p.E209K
AsPC-1
pancreas
COSMIC
VTPALS
DEG_SCF_FBW7_1
0.25
p.S227F
SIDM00516
Melanoma
GDSC
VTPALS
DEG_SCF_FBW7_1
0.5
p.S227F
MZ7-mel
skin
COSMIC
VTPALS
DEG_SCF_FBW7_1
0.5
p.P207T
SIDM01520
Oral Cavity Carcinoma
GDSC
VTPALS
DEG_SCF_FBW7_1
0.1944
Drug responses associated with LNPK mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTPALS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9C0E8
Endoplasmic reticulum junction formation protein lunapark
DEG_SCF_FBW7_1
212:217
VTPALS
FBXW7
0.9971
More...