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mutLBSgeneDB |
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| Gene summary for OLFM1 |
 Gene summary |
| Basic gene Info. | Gene symbol | OLFM1 |
| Gene name | olfactomedin 1 | |
| Synonyms | AMY|NOE1|NOELIN1|OlfA | |
| Cytomap | UCSC genome browser: 9q34.3 | |
| Type of gene | protein-coding | |
| RefGenes | NM_001282611.1, NM_001282612.1,NM_006334.3,NM_014279.4,NM_058199.2, | |
| Description | neuroblastoma proteinneuronal olfactomedin-related ER localized proteinnoelinolfactomedin related ER localized proteinolfactomedin-1pancortin 1 | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 605366 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000130558 | ||
| HPRD : 09249 | ||
| Vega : OTTHUMG00000020897 | ||
| Protein | UniProt: Q99784 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_OLFM1 | |
| BioGPS: 10439 | ||
| Pathway | NCI Pathway Interaction Database: OLFM1 | |
| KEGG: OLFM1 | ||
| REACTOME: OLFM1 | ||
| Pathway Commons: OLFM1 | ||
| Context | iHOP: OLFM1 | |
| ligand binding site mutation search in PubMed: OLFM1 | ||
| UCL Cancer Institute: OLFM1 | ||
| Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID |
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| Ligand binding site mutations for OLFM1 |
| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | G302 | G302R | COAD | 1 | D356 | D356N | UCEC | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for OLFM1 |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | G302 | G302R | 0.077068049 | D356 | D356N | -1.3913831 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for OLFM1 from PDB |
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| Differential gene expression and gene-gene network for OLFM1 |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for OLFM1 |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| umls:C0033578 | Prostatic Neoplasms | 1 | Biomarker |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for OLFM1 |
| Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of OLFM1 go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | CA | CALCIUM(2+) | 4xat | A | D356 | NA | SODIUM(1+) | 4xat | A | G302 D356 |
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| Conservation information for LBS of OLFM1 |
| Multiple alignments for Q99784 in multiple species |
| LBS | AA sequence | # species | Species | A405 | RSAGEAFIICG | 3 | Homo sapiens, Gallus gallus, Rattus norvegicus | D356 | GHSDIDLMVDE | 3 | Homo sapiens, Gallus gallus, Rattus norvegicus | D453 | HISMLDYNPKD | 3 | Homo sapiens, Gallus gallus, Rattus norvegicus | E404 | KRSAGEAFIIC | 3 | Homo sapiens, Gallus gallus, Rattus norvegicus | G302 | PWSGTGQVVYN | 3 | Homo sapiens, Gallus gallus, Rattus norvegicus | L357 | HSDIDLMVDEN | 2 | Gallus gallus, Rattus norvegicus | L357 | HSDIDLMVDES | 1 | Homo sapiens | L452 | SHISMLDYNPK | 3 | Homo sapiens, Gallus gallus, Rattus norvegicus | M358 | SDIDLMVDENG | 2 | Gallus gallus, Rattus norvegicus | M358 | SDIDLMVDESG | 1 | Homo sapiens | Q303 | WSGTGQVVYNG | 3 | Homo sapiens, Gallus gallus, Rattus norvegicus |
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