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mutLBSgeneDB |
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| Gene summary for RAB31 |
 Gene summary |
| Basic gene Info. | Gene symbol | RAB31 |
| Gene name | RAB31, member RAS oncogene family | |
| Synonyms | Rab22B | |
| Cytomap | UCSC genome browser: 18p11.3 | |
| Type of gene | protein-coding | |
| RefGenes | NM_006868.3, | |
| Description | ras-related protein Rab-22Bras-related protein Rab-31 | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 605694 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000168461 | ||
| HPRD : 05751 | ||
| Vega : OTTHUMG00000178513 | ||
| Protein | UniProt: Q13636 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_RAB31 | |
| BioGPS: 11031 | ||
| Pathway | NCI Pathway Interaction Database: RAB31 | |
| KEGG: RAB31 | ||
| REACTOME: RAB31 | ||
| Pathway Commons: RAB31 | ||
| Context | iHOP: RAB31 | |
| ligand binding site mutation search in PubMed: RAB31 | ||
| UCL Cancer Institute: RAB31 | ||
| Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID |
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| Ligand binding site mutations for RAB31 |
| Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.)  : non-synonymous mutation on LBS, Circle size denotes number of samples. |
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| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | S20 | S20L | LUAD | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for RAB31 |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | S20 | S20L | -0.039299317 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for RAB31 from PDB |
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| Differential gene expression and gene-gene network for RAB31 |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for RAB31 |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for RAB31 |
| Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of RAB31 go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | GNP | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 2fg5 | A | S20 |
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| Conservation information for LBS of RAB31 |
| Multiple alignments for Q13636 in multiple species |
| LBS | AA sequence | # species | Species | A149 | VVETSAKNAIN | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | D121 | AGNKCDLSDIR | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | D31 | VQDHFDHNISP | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | F30 | FVQDHFDHNIS | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | G15 | LLGDTGVGKSS | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | G17 | GDTGVGKSSIV | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | G63 | IWDTAGQERFH | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | H32 | QDHFDHNISPT | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | I34 | HFDHNISPTIG | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | K119 | AIAGNKCDLSD | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | K150 | VETSAKNAINI | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | K18 | DTGVGKSSIVC | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | L122 | GNKCDLSDIRE | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | N118 | MAIAGNKCDLS | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | P36 | DHNISPTIGAS | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | S148 | IVVETSAKNAI | 2 | Homo sapiens, Mus musculus | S148 | LVVETSAKNAI | 1 | Rattus norvegicus | S19 | TGVGKSSIVCR | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | S20 | GVGKSSIVCRF | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | T14 | CLLGDTGVGKS | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | T37 | HNISPTIGASF | 3 | Homo sapiens, Mus musculus, Rattus norvegicus | V16 | LGDTGVGKSSI | 3 | Homo sapiens, Mus musculus, Rattus norvegicus |
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